Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773520

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773520 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M147	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000230556		pseudogene similar to part of thioredoxin domain containing 11 (TXNDC11)	2.5850	0.0000
2	ENSG00000242595	RPL26P26	ribosomal protein L26 pseudogene 26	2.5850	0.0004
4	ENSG00000254132	MTND6P3	MT-ND6 pseudogene 3	2.5162	0.0000
5	ENSG00000257941		density-regulated protein (DENR) pseudogene	2.4905	0.0000
6	ENSG00000232242	ZYG11AP1	zyg-11 family member A, cell cycle regulator pseudogene 1	2.3628	0.0000
7	ENSG00000230292	NAALADL2-AS3	NAALADL2 antisense RNA 3	2.3219	0.0019
8	ENSG00000252083		NA	2.3219	0.0000
9	ENSG00000256499	LINC02468	long intergenic non-protein coding RNA 2468	2.3219	0.0019
10	ENSG00000264110	MIR4300	microRNA 4300	2.3219	0.0000
63119	ENSG00000206630	SNORD60	small nucleolar RNA, C/D box 60	-2.1369	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000238181	AHCYP2	adenosylhomocysteinase pseudogene 2	-2.1385	0.0000
63127	ENSG00000254941		ring finger protein 181 (RNF181) pseudogene	-2.1383	0.0000
63126	ENSG00000226695	ANKRD20A10P	ankyrin repeat domain 20 family member A10, pseudogene	-2.1380	0.0000
63125	ENSG00000184486	POU3F2	POU class 3 homeobox 2	-2.1379	0.0000
63124	ENSG00000182183	SHISAL2A	shisa like 2A	-2.1375	0.0000
63123	ENSG00000278727		novel transcript	-2.1374	0.0000
63122	ENSG00000241082	RN7SL259P	RNA, 7SL, cytoplasmic 259, pseudogene	-2.1372	0.0000
63121	ENSG00000251891	RNU7-79P	RNA, U7 small nuclear 79 pseudogene	-2.1369	0.0000
63120	ENSG00000281010		NA	-2.1369	0.0000
63119	ENSG00000206630	SNORD60	small nucleolar RNA, C/D box 60	-2.1369	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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