Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773520

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773520


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M147Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230556 pseudogene similar to part of thioredoxin domain containing 11 (TXNDC11) 2.5850 0.0000
2 ENSG00000242595 RPL26P26 ribosomal protein L26 pseudogene 26 2.5850 0.0004
4 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.5162 0.0000
5 ENSG00000257941 density-regulated protein (DENR) pseudogene 2.4905 0.0000
6 ENSG00000232242 ZYG11AP1 zyg-11 family member A, cell cycle regulator pseudogene 1 2.3628 0.0000
7 ENSG00000230292 NAALADL2-AS3 NAALADL2 antisense RNA 3 2.3219 0.0019
8 ENSG00000252083 NA 2.3219 0.0000
9 ENSG00000256499 LINC02468 long intergenic non-protein coding RNA 2468 2.3219 0.0019
10 ENSG00000264110 MIR4300 microRNA 4300 2.3219 0.0000
63119 ENSG00000206630 SNORD60 small nucleolar RNA, C/D box 60 -2.1369 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000238181 AHCYP2 adenosylhomocysteinase pseudogene 2 -2.1385 0.0000
63127 ENSG00000254941 ring finger protein 181 (RNF181) pseudogene -2.1383 0.0000
63126 ENSG00000226695 ANKRD20A10P ankyrin repeat domain 20 family member A10, pseudogene -2.1380 0.0000
63125 ENSG00000184486 POU3F2 POU class 3 homeobox 2 -2.1379 0.0000
63124 ENSG00000182183 SHISAL2A shisa like 2A -2.1375 0.0000
63123 ENSG00000278727 novel transcript -2.1374 0.0000
63122 ENSG00000241082 RN7SL259P RNA, 7SL, cytoplasmic 259, pseudogene -2.1372 0.0000
63121 ENSG00000251891 RNU7-79P RNA, U7 small nuclear 79 pseudogene -2.1369 0.0000
63120 ENSG00000281010 NA -2.1369 0.0000
63119 ENSG00000206630 SNORD60 small nucleolar RNA, C/D box 60 -2.1369 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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