SHOGoiN Cell Methylome: GSM2773520
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773520 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M147 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000230556 | pseudogene similar to part of thioredoxin domain containing 11 (TXNDC11) | 2.5850 | 0.0000 | |
| 2 | ENSG00000242595 | RPL26P26 | ribosomal protein L26 pseudogene 26 | 2.5850 | 0.0004 |
| 4 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 2.5162 | 0.0000 |
| 5 | ENSG00000257941 | density-regulated protein (DENR) pseudogene | 2.4905 | 0.0000 | |
| 6 | ENSG00000232242 | ZYG11AP1 | zyg-11 family member A, cell cycle regulator pseudogene 1 | 2.3628 | 0.0000 |
| 7 | ENSG00000230292 | NAALADL2-AS3 | NAALADL2 antisense RNA 3 | 2.3219 | 0.0019 |
| 8 | ENSG00000252083 | NA | 2.3219 | 0.0000 | |
| 9 | ENSG00000256499 | LINC02468 | long intergenic non-protein coding RNA 2468 | 2.3219 | 0.0019 |
| 10 | ENSG00000264110 | MIR4300 | microRNA 4300 | 2.3219 | 0.0000 |
| 63332 | ENSG00000258748 | novel transcript, antisense to KIF26A | -2.1879 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000176014 | TUBB6 | tubulin beta 6 class V | -2.1903 | 0.0000 |
| 63340 | ENSG00000283204 | MIR4434 | microRNA 4434 | -2.1902 | 0.0000 |
| 63339 | ENSG00000206867 | RNU6-356P | RNA, U6 small nuclear 356, pseudogene | -2.1901 | 0.0000 |
| 63338 | ENSG00000265393 | novel transcript, antisense to RECQL4 | -2.1891 | 0.0000 | |
| 63337 | ENSG00000163499 | CRYBA2 | crystallin beta A2 | -2.1890 | 0.0000 |
| 63336 | ENSG00000180867 | PDIA3P1 | protein disulfide isomerase family A member 3 pseudogene 1 | -2.1889 | 0.0000 |
| 63335 | ENSG00000204099 | NEU4 | neuraminidase 4 | -2.1884 | 0.0000 |
| 63334 | ENSG00000187583 | PLEKHN1 | pleckstrin homology domain containing N1 | -2.1880 | 0.0000 |
| 63333 | ENSG00000237819 | novel transcript | -2.1880 | 0.0000 | |
| 63332 | ENSG00000258748 | novel transcript, antisense to KIF26A | -2.1879 | 0.0000 |
