Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773520
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773520
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M147
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000230556
pseudogene similar to part of thioredoxin domain containing 11 (TXNDC11)
2.5850
0.0000
2
ENSG00000242595
RPL26P26
ribosomal protein L26 pseudogene 26
2.5850
0.0004
4
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
2.5162
0.0000
5
ENSG00000257941
density-regulated protein (DENR) pseudogene
2.4905
0.0000
6
ENSG00000232242
ZYG11AP1
zyg-11 family member A, cell cycle regulator pseudogene 1
2.3628
0.0000
7
ENSG00000230292
NAALADL2-AS3
NAALADL2 antisense RNA 3
2.3219
0.0019
8
ENSG00000252083
NA
2.3219
0.0000
9
ENSG00000256499
LINC02468
long intergenic non-protein coding RNA 2468
2.3219
0.0019
10
ENSG00000264110
MIR4300
microRNA 4300
2.3219
0.0000
63119
ENSG00000206630
SNORD60
small nucleolar RNA, C/D box 60
-2.1369
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000238181
AHCYP2
adenosylhomocysteinase pseudogene 2
-2.1385
0.0000
63127
ENSG00000254941
ring finger protein 181 (RNF181) pseudogene
-2.1383
0.0000
63126
ENSG00000226695
ANKRD20A10P
ankyrin repeat domain 20 family member A10, pseudogene
-2.1380
0.0000
63125
ENSG00000184486
POU3F2
POU class 3 homeobox 2
-2.1379
0.0000
63124
ENSG00000182183
SHISAL2A
shisa like 2A
-2.1375
0.0000
63123
ENSG00000278727
novel transcript
-2.1374
0.0000
63122
ENSG00000241082
RN7SL259P
RNA, 7SL, cytoplasmic 259, pseudogene
-2.1372
0.0000
63121
ENSG00000251891
RNU7-79P
RNA, U7 small nuclear 79 pseudogene
-2.1369
0.0000
63120
ENSG00000281010
NA
-2.1369
0.0000
63119
ENSG00000206630
SNORD60
small nucleolar RNA, C/D box 60
-2.1369
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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