SHOGoiN Cell Methylome: GSM2773520

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773520


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M147Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230556 pseudogene similar to part of thioredoxin domain containing 11 (TXNDC11) 2.5850 0.0000
2 ENSG00000242595 RPL26P26 ribosomal protein L26 pseudogene 26 2.5850 0.0004
4 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.5162 0.0000
5 ENSG00000257941 density-regulated protein (DENR) pseudogene 2.4905 0.0000
6 ENSG00000232242 ZYG11AP1 zyg-11 family member A, cell cycle regulator pseudogene 1 2.3628 0.0000
7 ENSG00000230292 NAALADL2-AS3 NAALADL2 antisense RNA 3 2.3219 0.0019
8 ENSG00000252083 NA 2.3219 0.0000
9 ENSG00000256499 LINC02468 long intergenic non-protein coding RNA 2468 2.3219 0.0019
10 ENSG00000264110 MIR4300 microRNA 4300 2.3219 0.0000
63332 ENSG00000258748 novel transcript, antisense to KIF26A -2.1879 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000176014 TUBB6 tubulin beta 6 class V -2.1903 0.0000
63340 ENSG00000283204 MIR4434 microRNA 4434 -2.1902 0.0000
63339 ENSG00000206867 RNU6-356P RNA, U6 small nuclear 356, pseudogene -2.1901 0.0000
63338 ENSG00000265393 novel transcript, antisense to RECQL4 -2.1891 0.0000
63337 ENSG00000163499 CRYBA2 crystallin beta A2 -2.1890 0.0000
63336 ENSG00000180867 PDIA3P1 protein disulfide isomerase family A member 3 pseudogene 1 -2.1889 0.0000
63335 ENSG00000204099 NEU4 neuraminidase 4 -2.1884 0.0000
63334 ENSG00000187583 PLEKHN1 pleckstrin homology domain containing N1 -2.1880 0.0000
63333 ENSG00000237819 novel transcript -2.1880 0.0000
63332 ENSG00000258748 novel transcript, antisense to KIF26A -2.1879 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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