Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773521

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773521


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M148Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186925 KRTAP19-6 keratin associated protein 19-6 3.0000 0.0000
2 ENSG00000200796 RNU6-753P RNA, U6 small nuclear 753, pseudogene 2.8870 0.0000
3 ENSG00000253083 RNA5SP106 RNA, 5S ribosomal pseudogene 106 2.8074 0.0003
4 ENSG00000227805 RPL21P90 ribosomal protein L21 pseudogene 90 2.7903 0.0000
5 ENSG00000213335 CLNS1AP1 chloride nucleotide-sensitive channel 1A pseudogene 1 2.7320 0.0000
6 ENSG00000235859 proteasome (prosome, macropain) 26S subunit, ATPase, 5 (PSMC5) pseudogene 2.6996 0.0000
7 ENSG00000242080 ribosomal protein L36a (RPL36A) pseudogene 2.6962 0.0000
8 ENSG00000207656 MIR489 microRNA 489 2.6455 0.0000
9 ENSG00000208014 MIR653 microRNA 653 2.6455 0.0000
10 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.6455 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000134201 GSTM5 glutathione S-transferase mu 5 -2.2510 0.0000
63127 ENSG00000230245 novel pseudogene -2.2507 0.0000
63126 ENSG00000238041 TMEM230P2 TMEM230 pseudogene 2 -2.2506 0.0000
63125 ENSG00000272931 LRRC8D-DT LRRC8D divergent transcript -2.2502 0.0000
63124 ENSG00000198932 GPRASP1 G protein-coupled receptor associated sorting protein 1 -2.2502 0.0000
63123 ENSG00000164326 CARTPT CART prepropeptide -2.2502 0.0000
63122 ENSG00000235927 NEXN-AS1 NEXN antisense RNA 1 -2.2500 0.0000
63121 ENSG00000125810 CD93 CD93 molecule -2.2499 0.0000
63120 ENSG00000258038 LINC02327 long intergenic non-protein coding RNA 2327 -2.2496 0.0000
10 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.6455 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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