SHOGoiN Cell Methylome: GSM2773521

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773521


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M148Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186925 KRTAP19-6 keratin associated protein 19-6 3.0000 0.0000
2 ENSG00000200796 RNU6-753P RNA, U6 small nuclear 753, pseudogene 2.8870 0.0000
3 ENSG00000253083 RNA5SP106 RNA, 5S ribosomal pseudogene 106 2.8074 0.0003
4 ENSG00000227805 RPL21P90 ribosomal protein L21 pseudogene 90 2.7903 0.0000
5 ENSG00000213335 CLNS1AP1 chloride nucleotide-sensitive channel 1A pseudogene 1 2.7320 0.0000
6 ENSG00000235859 proteasome (prosome, macropain) 26S subunit, ATPase, 5 (PSMC5) pseudogene 2.6996 0.0000
7 ENSG00000242080 ribosomal protein L36a (RPL36A) pseudogene 2.6962 0.0000
8 ENSG00000207656 MIR489 microRNA 489 2.6455 0.0000
9 ENSG00000208014 MIR653 microRNA 653 2.6455 0.0000
10 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.6455 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000261644 novel transcript, antisense to CYLD and NOD2 -2.3170 0.0000
63340 ENSG00000221844 DPP3P2 dipeptidyl peptidase 3 pseudogene 2 -2.3170 0.0000
63339 ENSG00000168913 ENHO energy homeostasis associated -2.3166 0.0000
63338 ENSG00000248440 novel transcript -2.3161 0.0000
63337 ENSG00000127561 SYNGR3 synaptogyrin 3 -2.3161 0.0000
63336 ENSG00000161179 YDJC YdjC chitooligosaccharide deacetylase homolog -2.3158 0.0000
63335 ENSG00000137727 ARHGAP20 Rho GTPase activating protein 20 -2.3151 0.0000
63334 ENSG00000271614 ATP2B1-AS1 ATP2B1 antisense RNA 1 -2.3150 0.0000
63333 ENSG00000233639 PANTR1 POU3F3 adjacent non-coding transcript 1 -2.3150 0.0000
63332 ENSG00000277586 NEFL neurofilament light -2.3141 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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