Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773522

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773522


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M149Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000188993 LRRC66 leucine rich repeat containing 66 3.3219 0.0000
2 ENSG00000223786 novel transcript 3.3219 0.0000
3 ENSG00000241882 novel transcript 3.2516 0.0000
4 ENSG00000214121 PRDX1P1 peroxiredoxin 1 pseudogene 1 3.0000 0.0000
5 ENSG00000235133 RPL35AP22 ribosomal protein L35a pseudogene 22 3.0000 0.0000
6 ENSG00000283345 M-phase phosphoprotein 10 (MPHOSPH10) pseudogene 3.0000 0.0000
7 ENSG00000220091 LAP3P1 leucine aminopeptidase 3 pseudogene 1 2.9435 0.0000
8 ENSG00000251825 RN7SKP19 RN7SK pseudogene 19 2.9001 0.0000
9 ENSG00000200238 RNA5SP133 RNA, 5S ribosomal pseudogene 133 2.8074 0.0000
10 ENSG00000259941 novel transcript 2.8074 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000254470 AP5B1 adaptor related protein complex 5 subunit beta 1 -2.2624 0.0000
63127 ENSG00000234638 novel transcript -2.2624 0.0000
63126 ENSG00000230869 AGAP10P ArfGAP with GTPase domain, ankyrin repeat and PH domain 10, pseudogene -2.2624 0.0000
63125 ENSG00000168772 CXXC4 CXXC finger protein 4 -2.2623 0.0000
63124 ENSG00000281468 novel transcript, sense intronic to novel transcript -2.2622 0.0000
63123 ENSG00000273483 novel transcript, antisense to WNT2B -2.2622 0.0000
63122 ENSG00000107281 NPDC1 neural proliferation, differentiation and control 1 -2.2621 0.0000
63121 ENSG00000199165 MIRLET7A1 microRNA let-7a-1 -2.2618 0.0000
63120 ENSG00000174586 ZNF497 zinc finger protein 497 -2.2617 0.0000
63119 ENSG00000197046 SIGLEC15 sialic acid binding Ig like lectin 15 -2.2615 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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