SHOGoiN Cell Methylome: GSM2773522

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773522


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M149Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000188993 LRRC66 leucine rich repeat containing 66 3.3219 0.0000
2 ENSG00000223786 novel transcript 3.3219 0.0000
3 ENSG00000241882 novel transcript 3.2516 0.0000
4 ENSG00000214121 PRDX1P1 peroxiredoxin 1 pseudogene 1 3.0000 0.0000
5 ENSG00000235133 RPL35AP22 ribosomal protein L35a pseudogene 22 3.0000 0.0000
6 ENSG00000283345 M-phase phosphoprotein 10 (MPHOSPH10) pseudogene 3.0000 0.0000
7 ENSG00000220091 LAP3P1 leucine aminopeptidase 3 pseudogene 1 2.9435 0.0000
8 ENSG00000251825 RN7SKP19 RN7SK pseudogene 19 2.9001 0.0000
9 ENSG00000200238 RNA5SP133 RNA, 5S ribosomal pseudogene 133 2.8074 0.0000
10 ENSG00000259941 novel transcript 2.8074 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000152056 AP1S3 adaptor related protein complex 1 subunit sigma 3 -2.3340 0.0000
63340 ENSG00000267695 novel transcript -2.3340 0.0000
63339 ENSG00000274515 novel transcript, antisense to IMP3 -2.3339 0.0000
63338 ENSG00000197329 PELI1 pellino E3 ubiquitin protein ligase 1 -2.3332 0.0000
63337 ENSG00000229124 VIM-AS1 VIM antisense RNA 1 -2.3324 0.0000
63336 ENSG00000026025 VIM vimentin -2.3324 0.0000
63335 ENSG00000169885 CALML6 calmodulin like 6 -2.3319 0.0000
63334 ENSG00000016391 CHDH choline dehydrogenase -2.3316 0.0000
63333 ENSG00000125533 BHLHE23 basic helix-loop-helix family member e23 -2.3311 0.0000
63332 ENSG00000238098 ABCA17P ATP binding cassette subfamily A member 17, pseudogene -2.3309 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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