Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773523

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773523 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M150	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000199202	RNA5SP289	RNA, 5S ribosomal pseudogene 289	2.6455	0.0000
2	ENSG00000270683	FAM71BP1	family with sequence similarity 71 member B pseudogene 1	2.5850	0.0002
3	ENSG00000200120		Y RNA	2.3219	0.0000
4	ENSG00000226253	MRPL35P3	mitochondrial ribosomal protein L35 pseudogene 3	2.3219	0.0000
5	ENSG00000227016	LINC02796	long intergenic non-protein coding RNA 2796	2.3219	0.0013
6	ENSG00000242080		ribosomal protein L36a (RPL36A) pseudogene	2.3219	0.0013
7	ENSG00000242922	RPL21P104	ribosomal protein L21 pseudogene 104	2.3219	0.0013
8	ENSG00000264699	LINC01912	long intergenic non-protein coding RNA 1912	2.3219	0.0000
9	ENSG00000267146		novel transcript, antisense to WDR7	2.3219	0.0013
10	ENSG00000254132	MTND6P3	MT-ND6 pseudogene 3	2.2788	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000234545	FAM133B	family with sequence similarity 133 member B	-2.0486	0.0000
63127	ENSG00000127334	DYRK2	dual specificity tyrosine phosphorylation regulated kinase 2	-2.0486	0.0000
63126	ENSG00000275895	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	-2.0485	0.0000
63125	ENSG00000187714	SLC18A3	solute carrier family 18 member A3	-2.0481	0.0000
63124	ENSG00000213115		chromosome 18 open reading frame 25 (C18orf25) pseudogene	-2.0480	0.0219
63123	ENSG00000105327	BBC3	BCL2 binding component 3	-2.0475	0.0000
63122	ENSG00000225728	TMEM230P1	TMEM230 pseudogene 1	-2.0475	0.0000
63121	ENSG00000279259		TEC	-2.0474	0.0000
63120	ENSG00000237371		novel transcript	-2.0474	0.0000
63119	ENSG00000242509	RN7SL156P	RNA, 7SL, cytoplasmic 156, pseudogene	-2.0472	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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