Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773523
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773523
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M150
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000199202
RNA5SP289
RNA, 5S ribosomal pseudogene 289
2.6455
0.0000
2
ENSG00000270683
FAM71BP1
family with sequence similarity 71 member B pseudogene 1
2.5850
0.0002
3
ENSG00000200120
Y RNA
2.3219
0.0000
4
ENSG00000226253
MRPL35P3
mitochondrial ribosomal protein L35 pseudogene 3
2.3219
0.0000
5
ENSG00000227016
LINC02796
long intergenic non-protein coding RNA 2796
2.3219
0.0013
6
ENSG00000242080
ribosomal protein L36a (RPL36A) pseudogene
2.3219
0.0013
7
ENSG00000242922
RPL21P104
ribosomal protein L21 pseudogene 104
2.3219
0.0013
8
ENSG00000264699
LINC01912
long intergenic non-protein coding RNA 1912
2.3219
0.0000
9
ENSG00000267146
novel transcript, antisense to WDR7
2.3219
0.0013
10
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
2.2788
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000234545
FAM133B
family with sequence similarity 133 member B
-2.0486
0.0000
63127
ENSG00000127334
DYRK2
dual specificity tyrosine phosphorylation regulated kinase 2
-2.0486
0.0000
63126
ENSG00000275895
U2AF1L5
U2 small nuclear RNA auxiliary factor 1 like 5
-2.0485
0.0000
63125
ENSG00000187714
SLC18A3
solute carrier family 18 member A3
-2.0481
0.0000
63124
ENSG00000213115
chromosome 18 open reading frame 25 (C18orf25) pseudogene
-2.0480
0.0219
63123
ENSG00000105327
BBC3
BCL2 binding component 3
-2.0475
0.0000
63122
ENSG00000225728
TMEM230P1
TMEM230 pseudogene 1
-2.0475
0.0000
63121
ENSG00000279259
TEC
-2.0474
0.0000
63120
ENSG00000237371
novel transcript
-2.0474
0.0000
63119
ENSG00000242509
RN7SL156P
RNA, 7SL, cytoplasmic 156, pseudogene
-2.0472
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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