SHOGoiN Cell Methylome: GSM2773523
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773523 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M150 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000199202 | RNA5SP289 | RNA, 5S ribosomal pseudogene 289 | 2.6455 | 0.0000 |
| 2 | ENSG00000270683 | FAM71BP1 | family with sequence similarity 71 member B pseudogene 1 | 2.5850 | 0.0002 |
| 3 | ENSG00000200120 | NA | 2.3219 | 0.0000 | |
| 4 | ENSG00000226253 | MRPL35P3 | mitochondrial ribosomal protein L35 pseudogene 3 | 2.3219 | 0.0000 |
| 5 | ENSG00000227016 | novel transcript | 2.3219 | 0.0013 | |
| 6 | ENSG00000242080 | ribosomal protein L36a (RPL36A) pseudogene | 2.3219 | 0.0013 | |
| 7 | ENSG00000242922 | RPL21P104 | ribosomal protein L21 pseudogene 104 | 2.3219 | 0.0013 |
| 8 | ENSG00000264699 | LINC01912 | long intergenic non-protein coding RNA 1912 | 2.3219 | 0.0000 |
| 9 | ENSG00000267146 | novel transcript, antisense to WDR7 | 2.3219 | 0.0013 | |
| 10 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 2.2788 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000243702 | RN7SL638P | RNA, 7SL, cytoplasmic 638, pseudogene | -2.1118 | 0.0000 |
| 63340 | ENSG00000105173 | CCNE1 | cyclin E1 | -2.1115 | 0.0000 |
| 63339 | ENSG00000198704 | GPX6 | glutathione peroxidase 6 | -2.1115 | 0.0000 |
| 63338 | ENSG00000271711 | Sin3A-associated protein, 30kDa, pseudogene. | -2.1110 | 0.0000 | |
| 63337 | ENSG00000203684 | IBA57-DT | IBA57 divergent transcript | -2.1108 | 0.0000 |
| 63336 | ENSG00000233028 | ribonuclease T2 (RNASET2) pseudogene | -2.1108 | 0.0000 | |
| 63335 | ENSG00000231445 | TIMM8AP1 | translocase of inner mitochondrial membrane 8A pseudogene 1 | -2.1105 | 0.0000 |
| 63334 | ENSG00000196092 | PAX5 | paired box 5 | -2.1104 | 0.0000 |
| 63333 | ENSG00000231349 | ribosomal protein L7 (RPL7) pseudogene | -2.1094 | 0.0000 | |
| 63332 | ENSG00000160951 | PTGER1 | prostaglandin E receptor 1 | -2.1092 | 0.0000 |
