Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773523

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773523


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M150Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199202 RNA5SP289 RNA, 5S ribosomal pseudogene 289 2.6455 0.0000
2 ENSG00000270683 FAM71BP1 family with sequence similarity 71 member B pseudogene 1 2.5850 0.0002
3 ENSG00000200120 Y RNA 2.3219 0.0000
4 ENSG00000226253 MRPL35P3 mitochondrial ribosomal protein L35 pseudogene 3 2.3219 0.0000
5 ENSG00000227016 LINC02796 long intergenic non-protein coding RNA 2796 2.3219 0.0013
6 ENSG00000242080 ribosomal protein L36a (RPL36A) pseudogene 2.3219 0.0013
7 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.3219 0.0013
8 ENSG00000264699 LINC01912 long intergenic non-protein coding RNA 1912 2.3219 0.0000
9 ENSG00000267146 novel transcript, antisense to WDR7 2.3219 0.0013
10 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.2788 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000234545 FAM133B family with sequence similarity 133 member B -2.0486 0.0000
63127 ENSG00000127334 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 -2.0486 0.0000
63126 ENSG00000275895 U2AF1L5 U2 small nuclear RNA auxiliary factor 1 like 5 -2.0485 0.0000
63125 ENSG00000187714 SLC18A3 solute carrier family 18 member A3 -2.0481 0.0000
63124 ENSG00000213115 chromosome 18 open reading frame 25 (C18orf25) pseudogene -2.0480 0.0219
63123 ENSG00000105327 BBC3 BCL2 binding component 3 -2.0475 0.0000
63122 ENSG00000225728 TMEM230P1 TMEM230 pseudogene 1 -2.0475 0.0000
63121 ENSG00000279259 TEC -2.0474 0.0000
63120 ENSG00000237371 novel transcript -2.0474 0.0000
63119 ENSG00000242509 RN7SL156P RNA, 7SL, cytoplasmic 156, pseudogene -2.0472 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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