Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773524

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773524 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M151	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000199315	RNA5SP347	RNA, 5S ribosomal pseudogene 347	3.3219	0.0000
2	ENSG00000273994	SDR42E1P1	short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1	3.0000	0.0000
3	ENSG00000230030		novel transcript	2.8775	0.0000
4	ENSG00000166013	TRIM53BP	tripartite motif containing 53B, pseudogene	2.8074	0.0000
5	ENSG00000218233	NEPNP	nephrocan, pseudogene	2.8074	0.0000
6	ENSG00000229014	RPL30P13	ribosomal protein L30 pseudogene 13	2.8074	0.0000
7	ENSG00000250124		novel transcript	2.8074	0.0000
8	ENSG00000257683	LINC02463	long intergenic non-protein coding RNA 2463	2.6825	0.0000
9	ENSG00000219627	CYCSP17	CYCS pseudogene 17	2.5879	0.0000
10	ENSG00000199196		NA	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000223726		novel transcript	-2.4158	0.0000
63127	ENSG00000236998		adaptor-related protein complex 3, mu 2 subunit (AP3M2) pseudogene	-2.4150	0.0000
63126	ENSG00000256043	CTSO	cathepsin O	-2.4145	0.0000
63125	ENSG00000280414		novel transcript	-2.4143	0.0000
63124	ENSG00000165186	PTCHD1	patched domain containing 1	-2.4142	0.0000
63123	ENSG00000120925	RNF170	ring finger protein 170	-2.4140	0.0000
63122	ENSG00000131401	NAPSB	napsin B aspartic peptidase, pseudogene	-2.4137	0.0000
63121	ENSG00000273355		novel transcript	-2.4137	0.0000
63120	ENSG00000146352	CLVS2	clavesin 2	-2.4133	0.0000
63119	ENSG00000283145		immunoglobulin superfamily member 3 (IGSF3) pseudogene	-2.4132	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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