SHOGoiN Cell Methylome: GSM2773524
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773524 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M151 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000199315 | RNA5SP347 | RNA, 5S ribosomal pseudogene 347 | 3.3219 | 0.0000 |
| 2 | ENSG00000273994 | SDR42E1P1 | short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1 | 3.0000 | 0.0000 |
| 3 | ENSG00000230030 | novel transcript | 2.8775 | 0.0000 | |
| 4 | ENSG00000166013 | TRIM53BP | tripartite motif containing 53B, pseudogene | 2.8074 | 0.0000 |
| 5 | ENSG00000218233 | NEPNP | nephrocan, pseudogene | 2.8074 | 0.0000 |
| 6 | ENSG00000229014 | RPL30P13 | ribosomal protein L30 pseudogene 13 | 2.8074 | 0.0000 |
| 7 | ENSG00000250124 | novel transcript | 2.8074 | 0.0000 | |
| 8 | ENSG00000257683 | LINC02463 | long intergenic non-protein coding RNA 2463 | 2.6825 | 0.0000 |
| 9 | ENSG00000219627 | CYCSP17 | CYCS pseudogene 17 | 2.5879 | 0.0000 |
| 10 | ENSG00000199196 | NA | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000167550 | RHEBL1 | RHEB like 1 | -2.4909 | 0.0000 |
| 63340 | ENSG00000146221 | TCTE1 | t-complex-associated-testis-expressed 1 | -2.4909 | 0.0000 |
| 63339 | ENSG00000265064 | MIR4692 | microRNA 4692 | -2.4908 | 0.0000 |
| 63338 | ENSG00000264735 | novel transcript | -2.4903 | 0.0000 | |
| 63337 | ENSG00000264662 | novel pseudogene | -2.4902 | 0.0000 | |
| 63336 | ENSG00000273398 | novel protein | -2.4901 | 0.0000 | |
| 63335 | ENSG00000261449 | novel transcript, antisense to AP3M2 | -2.4899 | 0.0000 | |
| 63334 | ENSG00000207024 | NA | -2.4896 | 0.0000 | |
| 63333 | ENSG00000226299 | RPSAP62 | ribosomal protein SA pseudogene 62 | -2.4888 | 0.0000 |
| 63332 | ENSG00000168936 | TMEM129 | transmembrane protein 129 | -2.4882 | 0.0000 |
