SHOGoiN Cell Methylome: GSM2773524

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773524


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M151Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199315 RNA5SP347 RNA, 5S ribosomal pseudogene 347 3.3219 0.0000
2 ENSG00000273994 SDR42E1P1 short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1 3.0000 0.0000
3 ENSG00000230030 novel transcript 2.8775 0.0000
4 ENSG00000166013 TRIM53BP tripartite motif containing 53B, pseudogene 2.8074 0.0000
5 ENSG00000218233 NEPNP nephrocan, pseudogene 2.8074 0.0000
6 ENSG00000229014 RPL30P13 ribosomal protein L30 pseudogene 13 2.8074 0.0000
7 ENSG00000250124 novel transcript 2.8074 0.0000
8 ENSG00000257683 LINC02463 long intergenic non-protein coding RNA 2463 2.6825 0.0000
9 ENSG00000219627 CYCSP17 CYCS pseudogene 17 2.5879 0.0000
10 ENSG00000199196 NA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000167550 RHEBL1 RHEB like 1 -2.4909 0.0000
63340 ENSG00000146221 TCTE1 t-complex-associated-testis-expressed 1 -2.4909 0.0000
63339 ENSG00000265064 MIR4692 microRNA 4692 -2.4908 0.0000
63338 ENSG00000264735 novel transcript -2.4903 0.0000
63337 ENSG00000264662 novel pseudogene -2.4902 0.0000
63336 ENSG00000273398 novel protein -2.4901 0.0000
63335 ENSG00000261449 novel transcript, antisense to AP3M2 -2.4899 0.0000
63334 ENSG00000207024 NA -2.4896 0.0000
63333 ENSG00000226299 RPSAP62 ribosomal protein SA pseudogene 62 -2.4888 0.0000
63332 ENSG00000168936 TMEM129 transmembrane protein 129 -2.4882 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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