Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773524
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773524
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M151
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000199315
RNA5SP347
RNA, 5S ribosomal pseudogene 347
3.3219
0.0000
2
ENSG00000273994
SDR42E1P1
short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1
3.0000
0.0000
3
ENSG00000230030
novel transcript
2.8775
0.0000
4
ENSG00000166013
TRIM53BP
tripartite motif containing 53B, pseudogene
2.8074
0.0000
5
ENSG00000218233
NEPNP
nephrocan, pseudogene
2.8074
0.0000
6
ENSG00000229014
RPL30P13
ribosomal protein L30 pseudogene 13
2.8074
0.0000
7
ENSG00000250124
novel transcript
2.8074
0.0000
8
ENSG00000257683
LINC02463
long intergenic non-protein coding RNA 2463
2.6825
0.0000
9
ENSG00000219627
CYCSP17
CYCS pseudogene 17
2.5879
0.0000
10
ENSG00000199196
NA
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000223726
novel transcript
-2.4158
0.0000
63127
ENSG00000236998
adaptor-related protein complex 3, mu 2 subunit (AP3M2) pseudogene
-2.4150
0.0000
63126
ENSG00000256043
CTSO
cathepsin O
-2.4145
0.0000
63125
ENSG00000280414
novel transcript
-2.4143
0.0000
63124
ENSG00000165186
PTCHD1
patched domain containing 1
-2.4142
0.0000
63123
ENSG00000120925
RNF170
ring finger protein 170
-2.4140
0.0000
63122
ENSG00000131401
NAPSB
napsin B aspartic peptidase, pseudogene
-2.4137
0.0000
63121
ENSG00000273355
novel transcript
-2.4137
0.0000
63120
ENSG00000146352
CLVS2
clavesin 2
-2.4133
0.0000
63119
ENSG00000283145
immunoglobulin superfamily member 3 (IGSF3) pseudogene
-2.4132
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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