Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773524

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773524


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M151Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199315 RNA5SP347 RNA, 5S ribosomal pseudogene 347 3.3219 0.0000
2 ENSG00000273994 SDR42E1P1 short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1 3.0000 0.0000
3 ENSG00000230030 novel transcript 2.8775 0.0000
4 ENSG00000166013 TRIM53BP tripartite motif containing 53B, pseudogene 2.8074 0.0000
5 ENSG00000218233 NEPNP nephrocan, pseudogene 2.8074 0.0000
6 ENSG00000229014 RPL30P13 ribosomal protein L30 pseudogene 13 2.8074 0.0000
7 ENSG00000250124 novel transcript 2.8074 0.0000
8 ENSG00000257683 LINC02463 long intergenic non-protein coding RNA 2463 2.6825 0.0000
9 ENSG00000219627 CYCSP17 CYCS pseudogene 17 2.5879 0.0000
10 ENSG00000199196 NA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000223726 novel transcript -2.4158 0.0000
63127 ENSG00000236998 adaptor-related protein complex 3, mu 2 subunit (AP3M2) pseudogene -2.4150 0.0000
63126 ENSG00000256043 CTSO cathepsin O -2.4145 0.0000
63125 ENSG00000280414 novel transcript -2.4143 0.0000
63124 ENSG00000165186 PTCHD1 patched domain containing 1 -2.4142 0.0000
63123 ENSG00000120925 RNF170 ring finger protein 170 -2.4140 0.0000
63122 ENSG00000131401 NAPSB napsin B aspartic peptidase, pseudogene -2.4137 0.0000
63121 ENSG00000273355 novel transcript -2.4137 0.0000
63120 ENSG00000146352 CLVS2 clavesin 2 -2.4133 0.0000
63119 ENSG00000283145 immunoglobulin superfamily member 3 (IGSF3) pseudogene -2.4132 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...