SHOGoiN Cell Methylome: GSM2773525
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773525 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M152 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000233848 | novel transcript | 3.0000 | 0.0000 | |
| 2 | ENSG00000199246 | RNU6-896P | RNA, U6 small nuclear 896, pseudogene | 2.5850 | 0.0000 |
| 3 | ENSG00000215054 | HNRNPCP10 | heterogeneous nuclear ribonucleoprotein C pseudogene 10 | 2.5850 | 0.0001 |
| 4 | ENSG00000243758 | RPL35AP15 | ribosomal protein L35a pseudogene 15 | 2.5850 | 0.0001 |
| 5 | ENSG00000279401 | TEC | 2.5850 | 0.0001 | |
| 6 | ENSG00000219951 | glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene | 2.4812 | 0.0000 | |
| 7 | ENSG00000227138 | pseudogene similar to part of ribosomal protein S3A RPS3A | 2.3877 | 0.0000 | |
| 8 | ENSG00000199390 | SNORD114-7 | small nucleolar RNA, C/D box 114-7 | 2.3628 | 0.0000 |
| 9 | ENSG00000199172 | MIR331 | microRNA 331 | 2.3219 | 0.0000 |
| 10 | ENSG00000206752 | RNU6-1323P | RNA, U6 small nuclear 1323, pseudogene | 2.3219 | 0.0008 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000140391 | TSPAN3 | tetraspanin 3 | -2.3246 | 0.0000 |
| 63340 | ENSG00000114383 | TUSC2 | tumor suppressor 2, mitochondrial calcium regulator | -2.3231 | 0.0000 |
| 63339 | ENSG00000213401 | MAGEA12 | MAGE family member A12 | -2.3227 | 0.0000 |
| 63338 | ENSG00000125166 | GOT2 | glutamic-oxaloacetic transaminase 2 | -2.3221 | 0.0000 |
| 63337 | ENSG00000273989 | novel transcript, sense intronic to CCDC91 | -2.3219 | 1.0000 | |
| 63336 | ENSG00000270814 | TMEM261P1 | transmembrane protein 261 pseudogene 1 | -2.3219 | 0.3666 |
| 63335 | ENSG00000251055 | novel transcript | -2.3219 | 0.0919 | |
| 63334 | ENSG00000230934 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene | -2.3219 | 0.3666 | |
| 63333 | ENSG00000228802 | novel transcript | -2.3219 | 0.2388 | |
| 63332 | ENSG00000228446 | ankyrin repeat domain 49 (ANKRD49) pseudogene | -2.3219 | 1.0000 |
