Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773525

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773525


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M152Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233848 novel transcript 3.0000 0.0000
2 ENSG00000199246 RNU6-896P RNA, U6 small nuclear 896, pseudogene 2.5850 0.0000
3 ENSG00000215054 HNRNPCP10 heterogeneous nuclear ribonucleoprotein C pseudogene 10 2.5850 0.0001
4 ENSG00000243758 RPL35AP15 ribosomal protein L35a pseudogene 15 2.5850 0.0001
5 ENSG00000279401 TEC 2.5850 0.0001
6 ENSG00000219951 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene 2.4812 0.0000
7 ENSG00000227138 pseudogene similar to part of ribosomal protein S3A RPS3A 2.3877 0.0000
8 ENSG00000199390 SNORD114-7 small nucleolar RNA, C/D box 114-7 2.3628 0.0000
9 ENSG00000199172 MIR331 microRNA 331 2.3219 0.0000
10 ENSG00000206752 RNU6-1323P RNA, U6 small nuclear 1323, pseudogene 2.3219 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000235934 novel transcript -2.2564 0.0000
63126 ENSG00000238184 CD81-AS1 CD81 antisense RNA 1 -2.2559 0.0000
63125 ENSG00000117394 SLC2A1 solute carrier family 2 member 1 -2.2556 0.0000
63124 ENSG00000270504 novel transcript, antisense to PXDC1 -2.2556 0.0000
63123 ENSG00000231964 novel transcript -2.2549 0.0000
63122 ENSG00000226299 RPSAP62 ribosomal protein SA pseudogene 62 -2.2542 0.0000
63121 ENSG00000119915 ELOVL3 ELOVL fatty acid elongase 3 -2.2542 0.0000
63120 ENSG00000248705 UDP glycosyltransferase 1 family, polypeptide A3 (UGT1A3) pseudogene -2.2542 0.0000
10 ENSG00000206752 RNU6-1323P RNA, U6 small nuclear 1323, pseudogene 2.3219 0.0008
9 ENSG00000199172 MIR331 microRNA 331 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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