Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773525
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773525
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M152
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000233848
novel transcript
3.0000
0.0000
2
ENSG00000199246
RNU6-896P
RNA, U6 small nuclear 896, pseudogene
2.5850
0.0000
3
ENSG00000215054
HNRNPCP10
heterogeneous nuclear ribonucleoprotein C pseudogene 10
2.5850
0.0001
4
ENSG00000243758
RPL35AP15
ribosomal protein L35a pseudogene 15
2.5850
0.0001
5
ENSG00000279401
TEC
2.5850
0.0001
6
ENSG00000219951
glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene
2.4812
0.0000
7
ENSG00000227138
pseudogene similar to part of ribosomal protein S3A RPS3A
2.3877
0.0000
8
ENSG00000199390
SNORD114-7
small nucleolar RNA, C/D box 114-7
2.3628
0.0000
9
ENSG00000199172
MIR331
microRNA 331
2.3219
0.0000
10
ENSG00000206752
RNU6-1323P
RNA, U6 small nuclear 1323, pseudogene
2.3219
0.0008
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000235934
novel transcript
-2.2564
0.0000
63126
ENSG00000238184
CD81-AS1
CD81 antisense RNA 1
-2.2559
0.0000
63125
ENSG00000117394
SLC2A1
solute carrier family 2 member 1
-2.2556
0.0000
63124
ENSG00000270504
novel transcript, antisense to PXDC1
-2.2556
0.0000
63123
ENSG00000231964
novel transcript
-2.2549
0.0000
63122
ENSG00000226299
RPSAP62
ribosomal protein SA pseudogene 62
-2.2542
0.0000
63121
ENSG00000119915
ELOVL3
ELOVL fatty acid elongase 3
-2.2542
0.0000
63120
ENSG00000248705
UDP glycosyltransferase 1 family, polypeptide A3 (UGT1A3) pseudogene
-2.2542
0.0000
10
ENSG00000206752
RNU6-1323P
RNA, U6 small nuclear 1323, pseudogene
2.3219
0.0008
9
ENSG00000199172
MIR331
microRNA 331
2.3219
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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