Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773525

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773525 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M152	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000233848		novel transcript	3.0000	0.0000
2	ENSG00000199246	RNU6-896P	RNA, U6 small nuclear 896, pseudogene	2.5850	0.0000
3	ENSG00000215054	HNRNPCP10	heterogeneous nuclear ribonucleoprotein C pseudogene 10	2.5850	0.0001
4	ENSG00000243758	RPL35AP15	ribosomal protein L35a pseudogene 15	2.5850	0.0001
5	ENSG00000279401		TEC	2.5850	0.0001
6	ENSG00000219951		glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene	2.4812	0.0000
7	ENSG00000227138		pseudogene similar to part of ribosomal protein S3A RPS3A	2.3877	0.0000
8	ENSG00000199390	SNORD114-7	small nucleolar RNA, C/D box 114-7	2.3628	0.0000
9	ENSG00000199172	MIR331	microRNA 331	2.3219	0.0000
10	ENSG00000206752	RNU6-1323P	RNA, U6 small nuclear 1323, pseudogene	2.3219	0.0008

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000235934		novel transcript	-2.2564	0.0000
63126	ENSG00000238184	CD81-AS1	CD81 antisense RNA 1	-2.2559	0.0000
63125	ENSG00000117394	SLC2A1	solute carrier family 2 member 1	-2.2556	0.0000
63124	ENSG00000270504		novel transcript, antisense to PXDC1	-2.2556	0.0000
63123	ENSG00000231964		novel transcript	-2.2549	0.0000
63122	ENSG00000226299	RPSAP62	ribosomal protein SA pseudogene 62	-2.2542	0.0000
63121	ENSG00000119915	ELOVL3	ELOVL fatty acid elongase 3	-2.2542	0.0000
63120	ENSG00000248705		UDP glycosyltransferase 1 family, polypeptide A3 (UGT1A3) pseudogene	-2.2542	0.0000
10	ENSG00000206752	RNU6-1323P	RNA, U6 small nuclear 1323, pseudogene	2.3219	0.0008
9	ENSG00000199172	MIR331	microRNA 331	2.3219	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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