SHOGoiN Cell Methylome: GSM2773525

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773525


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M152Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233848 novel transcript 3.0000 0.0000
2 ENSG00000199246 RNU6-896P RNA, U6 small nuclear 896, pseudogene 2.5850 0.0000
3 ENSG00000215054 HNRNPCP10 heterogeneous nuclear ribonucleoprotein C pseudogene 10 2.5850 0.0001
4 ENSG00000243758 RPL35AP15 ribosomal protein L35a pseudogene 15 2.5850 0.0001
5 ENSG00000279401 TEC 2.5850 0.0001
6 ENSG00000219951 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene 2.4812 0.0000
7 ENSG00000227138 pseudogene similar to part of ribosomal protein S3A RPS3A 2.3877 0.0000
8 ENSG00000199390 SNORD114-7 small nucleolar RNA, C/D box 114-7 2.3628 0.0000
9 ENSG00000199172 MIR331 microRNA 331 2.3219 0.0000
10 ENSG00000206752 RNU6-1323P RNA, U6 small nuclear 1323, pseudogene 2.3219 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000140391 TSPAN3 tetraspanin 3 -2.3246 0.0000
63340 ENSG00000114383 TUSC2 tumor suppressor 2, mitochondrial calcium regulator -2.3231 0.0000
63339 ENSG00000213401 MAGEA12 MAGE family member A12 -2.3227 0.0000
63338 ENSG00000125166 GOT2 glutamic-oxaloacetic transaminase 2 -2.3221 0.0000
63337 ENSG00000273989 novel transcript, sense intronic to CCDC91 -2.3219 1.0000
63336 ENSG00000270814 TMEM261P1 transmembrane protein 261 pseudogene 1 -2.3219 0.3666
63335 ENSG00000251055 novel transcript -2.3219 0.0919
63334 ENSG00000230934 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene -2.3219 0.3666
63333 ENSG00000228802 novel transcript -2.3219 0.2388
63332 ENSG00000228446 ankyrin repeat domain 49 (ANKRD49) pseudogene -2.3219 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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