SHOGoiN Cell Methylome: GSM2773526

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773526


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M153Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233555 ribosomal protein L7a (RPL7A) pseudogene 3.0000 0.0000
2 ENSG00000212599 RNU6-279P RNA, U6 small nuclear 279, pseudogene 2.5850 0.0000
3 ENSG00000224490 TTC21B-AS1 TTC21B antisense RNA 1 2.3219 0.0014
4 ENSG00000225539 LINC01821 long intergenic non-protein coding RNA 1821 2.3219 0.0014
5 ENSG00000244099 RPS23P3 ribosomal protein S23 pseudogene 3 2.3219 0.0000
6 ENSG00000255486 tripartite motif-containing protein (TRIM) pseudogene 2.3219 0.0014
7 ENSG00000270835 CTAGE family, member 5 (CTAGE5) pseudogene 2.1727 0.0000
8 ENSG00000225418 AKR1C5P aldo-keto reductase family 1 member C5, pseudogene 2.1610 0.0000
9 ENSG00000214429 CYCSP6 CYCS pseudogene 6 2.0485 0.0000
10 ENSG00000259049 novel transcript, antisense to GNPNAT1 2.0014 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000167220 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 -2.0882 0.0000
63340 ENSG00000237941 KCNQ1DN KCNQ1 downstream neighbor -2.0878 0.0000
63339 ENSG00000275897 novel transcript -2.0873 0.0000
63338 ENSG00000232117 LINC00384 long intergenic non-protein coding RNA 384 -2.0872 0.0000
63337 ENSG00000274588 DGKK diacylglycerol kinase kappa -2.0870 0.0000
63336 ENSG00000169213 RAB3B RAB3B, member RAS oncogene family -2.0864 0.0000
63335 ENSG00000154277 UCHL1 ubiquitin C-terminal hydrolase L1 -2.0862 0.0000
63334 ENSG00000236530 KPNA2P1 karyopherin subunit alpha 2 pseudogene 1 -2.0861 0.0000
63333 ENSG00000145386 CCNA2 cyclin A2 -2.0854 0.0000
63332 ENSG00000101412 E2F1 E2F transcription factor 1 -2.0852 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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