Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773526

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773526


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M153Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233555 ribosomal protein L7a (RPL7A) pseudogene 3.0000 0.0000
2 ENSG00000212599 RNU6-279P RNA, U6 small nuclear 279, pseudogene 2.5850 0.0000
3 ENSG00000224490 TTC21B-AS1 TTC21B antisense RNA 1 2.3219 0.0014
4 ENSG00000225539 LINC01821 long intergenic non-protein coding RNA 1821 2.3219 0.0014
5 ENSG00000244099 RPS23P3 ribosomal protein S23 pseudogene 3 2.3219 0.0000
6 ENSG00000255486 tripartite motif-containing protein (TRIM) pseudogene 2.3219 0.0014
7 ENSG00000270835 CTAGE family, member 5 (CTAGE5) pseudogene 2.1727 0.0000
8 ENSG00000225418 AKR1C5P aldo-keto reductase family 1 member C5, pseudogene 2.1610 0.0000
9 ENSG00000214429 CYCSP6 CYCS pseudogene 6 2.0485 0.0000
10 ENSG00000259049 novel transcript, antisense to GNPNAT1 2.0014 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000249326 uncharacterized LOC101929081 -2.0249 0.0000
63127 ENSG00000257093 DENND11 DENN domain containing 11 -2.0248 0.0000
63126 ENSG00000243766 HOTTIP HOXA distal transcript antisense RNA -2.0242 0.0000
63125 ENSG00000197872 CYRIA CYFIP related Rac1 interactor A -2.0241 0.0000
63124 ENSG00000279356 novel transcript -2.0240 0.0000
63123 ENSG00000049130 KITLG KIT ligand -2.0237 0.0000
63122 ENSG00000136944 LMX1B LIM homeobox transcription factor 1 beta -2.0235 0.0000
63121 ENSG00000250788 TUBB8P4 tubulin beta 8 class VIII pseudogene 4 -2.0232 0.0000
63120 ENSG00000170604 IRF2BP1 interferon regulatory factor 2 binding protein 1 -2.0228 0.0000
63119 ENSG00000054179 ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 -2.0226 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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