Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773527

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773527 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M154	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000252369	RNU7-51P	RNA, U7 small nuclear 51 pseudogene	3.0000	0.0000
2	ENSG00000223605		ninein (GSK3B interacting protein) (NIN) pseudogene	2.8074	0.0001
3	ENSG00000255459		ribosomal protein S24 pseudogene	2.8074	0.0001
4	ENSG00000200600		Y RNA	2.5850	0.0003
5	ENSG00000224012		pseudogene similar to part of tropomyosin 2 (beta) TPM2	2.5850	0.0000
6	ENSG00000229182	MRPS16P1	mitochondrial ribosomal protein S16 pseudogene 1	2.5850	0.0003
7	ENSG00000244653	UBFD1P1	ubiquitin family domain containing 1 pseudogene 1	2.5850	0.0000
8	ENSG00000265861	MIR4495	microRNA 4495	2.5850	0.0003
10	ENSG00000251552	COQ10BP2	coenzyme Q10B pseudogene 2	2.3585	0.0000
63119	ENSG00000123989	CHPF	chondroitin polymerizing factor	-1.8545	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000237523	LINC00857	long intergenic non-protein coding RNA 857	-1.8569	0.0000
63127	ENSG00000173852	DPY19L1	dpy-19 like C-mannosyltransferase 1	-1.8568	0.0000
63126	ENSG00000254860	TMEM9B-AS1	TMEM9B antisense RNA 1	-1.8567	0.0000
63125	ENSG00000152779	SLC16A12	solute carrier family 16 member 12	-1.8565	0.0000
63124	ENSG00000141858	SAMD1	sterile alpha motif domain containing 1	-1.8563	0.0000
63123	ENSG00000168427	KLHL30	kelch like family member 30	-1.8562	0.0000
63122	ENSG00000228485	GRK5-IT1	GRK5 intronic transcript 1	-1.8554	0.0000
63121	ENSG00000279565		TEC	-1.8551	0.0000
63120	ENSG00000213849		ribosomal protein L31 (RPL31) pseudogene	-1.8551	0.0000
63119	ENSG00000123989	CHPF	chondroitin polymerizing factor	-1.8545	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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