Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773527

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773527


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M154Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252369 RNU7-51P RNA, U7 small nuclear 51 pseudogene 3.0000 0.0000
2 ENSG00000223605 ninein (GSK3B interacting protein) (NIN) pseudogene 2.8074 0.0001
3 ENSG00000255459 ribosomal protein S24 pseudogene 2.8074 0.0001
4 ENSG00000200600 Y RNA 2.5850 0.0003
5 ENSG00000224012 pseudogene similar to part of tropomyosin 2 (beta) TPM2 2.5850 0.0000
6 ENSG00000229182 MRPS16P1 mitochondrial ribosomal protein S16 pseudogene 1 2.5850 0.0003
7 ENSG00000244653 UBFD1P1 ubiquitin family domain containing 1 pseudogene 1 2.5850 0.0000
8 ENSG00000265861 MIR4495 microRNA 4495 2.5850 0.0003
10 ENSG00000251552 COQ10BP2 coenzyme Q10B pseudogene 2 2.3585 0.0000
63119 ENSG00000123989 CHPF chondroitin polymerizing factor -1.8545 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000237523 LINC00857 long intergenic non-protein coding RNA 857 -1.8569 0.0000
63127 ENSG00000173852 DPY19L1 dpy-19 like C-mannosyltransferase 1 -1.8568 0.0000
63126 ENSG00000254860 TMEM9B-AS1 TMEM9B antisense RNA 1 -1.8567 0.0000
63125 ENSG00000152779 SLC16A12 solute carrier family 16 member 12 -1.8565 0.0000
63124 ENSG00000141858 SAMD1 sterile alpha motif domain containing 1 -1.8563 0.0000
63123 ENSG00000168427 KLHL30 kelch like family member 30 -1.8562 0.0000
63122 ENSG00000228485 GRK5-IT1 GRK5 intronic transcript 1 -1.8554 0.0000
63121 ENSG00000279565 TEC -1.8551 0.0000
63120 ENSG00000213849 ribosomal protein L31 (RPL31) pseudogene -1.8551 0.0000
63119 ENSG00000123989 CHPF chondroitin polymerizing factor -1.8545 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...