SHOGoiN Cell Methylome: GSM2773527
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773527 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M154 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000252369 | RNU7-51P | RNA, U7 small nuclear 51 pseudogene | 3.0000 | 0.0000 |
| 2 | ENSG00000223605 | ninein (GSK3B interacting protein) (NIN) pseudogene | 2.8074 | 0.0001 | |
| 3 | ENSG00000255459 | ribosomal protein S24 pseudogene | 2.8074 | 0.0001 | |
| 4 | ENSG00000200600 | NA | 2.5850 | 0.0003 | |
| 5 | ENSG00000224012 | pseudogene similar to part of tropomyosin 2 (beta) TPM2 | 2.5850 | 0.0000 | |
| 6 | ENSG00000229182 | MRPS16P1 | mitochondrial ribosomal protein S16 pseudogene 1 | 2.5850 | 0.0003 |
| 7 | ENSG00000244653 | UBFD1P1 | ubiquitin family domain containing 1 pseudogene 1 | 2.5850 | 0.0000 |
| 8 | ENSG00000265861 | MIR4495 | microRNA 4495 | 2.5850 | 0.0003 |
| 10 | ENSG00000251552 | COQ10BP2 | coenzyme Q10B pseudogene 2 | 2.3585 | 0.0000 |
| 63332 | ENSG00000214702 | COMM domain containing 4 (COMMD4) pseudogene | -1.9155 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000272902 | TBC1D8-AS1 | TBC1 domain family member 8 antisense RNA 1 | -1.9183 | 0.0000 |
| 63340 | ENSG00000215278 | RPS7P6 | ribosomal protein S7 pseudogene 6 | -1.9183 | 0.0058 |
| 63339 | ENSG00000253099 | RNU2-60P | RNA, U2 small nuclear 60, pseudogene | -1.9168 | 0.0000 |
| 63338 | ENSG00000273988 | chromosome X open reading frame 48 (CXorf48) pseudogene | -1.9168 | 0.0000 | |
| 63337 | ENSG00000081052 | COL4A4 | collagen type IV alpha 4 chain | -1.9166 | 0.0000 |
| 63336 | ENSG00000283663 | novel transcript | -1.9165 | 0.0000 | |
| 63335 | ENSG00000254639 | novel transcript | -1.9164 | 0.0000 | |
| 63334 | ENSG00000183837 | PNMA3 | PNMA family member 3 | -1.9158 | 0.0000 |
| 63333 | ENSG00000186010 | NDUFA13 | NADH:ubiquinone oxidoreductase subunit A13 | -1.9157 | 0.0000 |
| 63332 | ENSG00000214702 | COMM domain containing 4 (COMMD4) pseudogene | -1.9155 | 0.0000 |
