Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773527
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773527
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M154
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000252369
RNU7-51P
RNA, U7 small nuclear 51 pseudogene
3.0000
0.0000
2
ENSG00000223605
ninein (GSK3B interacting protein) (NIN) pseudogene
2.8074
0.0001
3
ENSG00000255459
ribosomal protein S24 pseudogene
2.8074
0.0001
4
ENSG00000200600
Y RNA
2.5850
0.0003
5
ENSG00000224012
pseudogene similar to part of tropomyosin 2 (beta) TPM2
2.5850
0.0000
6
ENSG00000229182
MRPS16P1
mitochondrial ribosomal protein S16 pseudogene 1
2.5850
0.0003
7
ENSG00000244653
UBFD1P1
ubiquitin family domain containing 1 pseudogene 1
2.5850
0.0000
8
ENSG00000265861
MIR4495
microRNA 4495
2.5850
0.0003
10
ENSG00000251552
COQ10BP2
coenzyme Q10B pseudogene 2
2.3585
0.0000
63119
ENSG00000123989
CHPF
chondroitin polymerizing factor
-1.8545
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000237523
LINC00857
long intergenic non-protein coding RNA 857
-1.8569
0.0000
63127
ENSG00000173852
DPY19L1
dpy-19 like C-mannosyltransferase 1
-1.8568
0.0000
63126
ENSG00000254860
TMEM9B-AS1
TMEM9B antisense RNA 1
-1.8567
0.0000
63125
ENSG00000152779
SLC16A12
solute carrier family 16 member 12
-1.8565
0.0000
63124
ENSG00000141858
SAMD1
sterile alpha motif domain containing 1
-1.8563
0.0000
63123
ENSG00000168427
KLHL30
kelch like family member 30
-1.8562
0.0000
63122
ENSG00000228485
GRK5-IT1
GRK5 intronic transcript 1
-1.8554
0.0000
63121
ENSG00000279565
TEC
-1.8551
0.0000
63120
ENSG00000213849
ribosomal protein L31 (RPL31) pseudogene
-1.8551
0.0000
63119
ENSG00000123989
CHPF
chondroitin polymerizing factor
-1.8545
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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