SHOGoiN Cell Methylome: GSM2773527

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773527


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M154Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252369 RNU7-51P RNA, U7 small nuclear 51 pseudogene 3.0000 0.0000
2 ENSG00000223605 ninein (GSK3B interacting protein) (NIN) pseudogene 2.8074 0.0001
3 ENSG00000255459 ribosomal protein S24 pseudogene 2.8074 0.0001
4 ENSG00000200600 NA 2.5850 0.0003
5 ENSG00000224012 pseudogene similar to part of tropomyosin 2 (beta) TPM2 2.5850 0.0000
6 ENSG00000229182 MRPS16P1 mitochondrial ribosomal protein S16 pseudogene 1 2.5850 0.0003
7 ENSG00000244653 UBFD1P1 ubiquitin family domain containing 1 pseudogene 1 2.5850 0.0000
8 ENSG00000265861 MIR4495 microRNA 4495 2.5850 0.0003
10 ENSG00000251552 COQ10BP2 coenzyme Q10B pseudogene 2 2.3585 0.0000
63332 ENSG00000214702 COMM domain containing 4 (COMMD4) pseudogene -1.9155 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000272902 TBC1D8-AS1 TBC1 domain family member 8 antisense RNA 1 -1.9183 0.0000
63340 ENSG00000215278 RPS7P6 ribosomal protein S7 pseudogene 6 -1.9183 0.0058
63339 ENSG00000253099 RNU2-60P RNA, U2 small nuclear 60, pseudogene -1.9168 0.0000
63338 ENSG00000273988 chromosome X open reading frame 48 (CXorf48) pseudogene -1.9168 0.0000
63337 ENSG00000081052 COL4A4 collagen type IV alpha 4 chain -1.9166 0.0000
63336 ENSG00000283663 novel transcript -1.9165 0.0000
63335 ENSG00000254639 novel transcript -1.9164 0.0000
63334 ENSG00000183837 PNMA3 PNMA family member 3 -1.9158 0.0000
63333 ENSG00000186010 NDUFA13 NADH:ubiquinone oxidoreductase subunit A13 -1.9157 0.0000
63332 ENSG00000214702 COMM domain containing 4 (COMMD4) pseudogene -1.9155 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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