Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773528
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773528
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M155
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000214628
NDUFB5P2
NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2
2.8074
0.0000
2
ENSG00000222459
RNA5SP293
RNA, 5S ribosomal pseudogene 293
2.5850
0.0000
3
ENSG00000235674
LDHAP2
lactate dehydrogenase A pseudogene 2
2.5850
0.0000
4
ENSG00000245711
NADK2-AS1
NADK2 antisense RNA 1
2.5850
0.0000
5
ENSG00000233444
mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene
2.5020
0.0000
6
ENSG00000213542
ribosomal protein L7a (RPL7A) pseudogene
2.4534
0.0000
7
ENSG00000207994
MIR100
microRNA 100
2.4318
0.0000
8
ENSG00000177888
ZBTB41
zinc finger and BTB domain containing 41
2.3219
0.0021
9
ENSG00000231063
RPL6P6
ribosomal protein L6 pseudogene 6
2.3219
0.0000
10
ENSG00000233254
RPL21P134
ribosomal protein L21 pseudogene 134
2.3219
0.0021
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000250320
EDIL3-DT
EDIL3 divergent transcript
-1.9922
0.0000
63127
ENSG00000164032
H2AZ1
H2A.Z variant histone 1
-1.9920
0.0000
63126
ENSG00000271732
novel transcript
-1.9919
0.0000
63125
ENSG00000280186
TEC
-1.9908
0.0000
63124
ENSG00000186493
C5orf38
chromosome 5 open reading frame 38
-1.9907
0.0000
63123
ENSG00000256870
SLC5A8
solute carrier family 5 member 8
-1.9907
0.0000
63122
ENSG00000250709
CCDC169-SOHLH2
CCDC169-SOHLH2 readthrough
-1.9904
0.0000
63121
ENSG00000242715
CCDC169
coiled-coil domain containing 169
-1.9904
0.0000
63120
ENSG00000265943
novel transcript, antisense to RBBP8
-1.9903
0.0000
63119
ENSG00000248672
LY75-CD302
LY75-CD302 readthrough
-1.9898
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...