SHOGoiN Cell Methylome: GSM2773528

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773528


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M155Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214628 NDUFB5P2 NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2 2.8074 0.0000
2 ENSG00000222459 RNA5SP293 RNA, 5S ribosomal pseudogene 293 2.5850 0.0000
3 ENSG00000235674 LDHAP2 lactate dehydrogenase A pseudogene 2 2.5850 0.0000
4 ENSG00000245711 NADK2-AS1 NADK2 antisense RNA 1 2.5850 0.0000
5 ENSG00000233444 mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene 2.5020 0.0000
6 ENSG00000213542 ribosomal protein L7a (RPL7A) pseudogene 2.4534 0.0000
7 ENSG00000207994 MIR100 microRNA 100 2.4318 0.0000
8 ENSG00000177888 ZBTB41 zinc finger and BTB domain containing 41 2.3219 0.0021
9 ENSG00000231063 ribosomal protein L6 (RPL6) pseudogene 2.3219 0.0000
10 ENSG00000233254 RPL21P134 ribosomal protein L21 pseudogene 134 2.3219 0.0021

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000168032 ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 -2.0571 0.0000
63340 ENSG00000220758 VN1R10P vomeronasal 1 receptor 10 pseudogene -2.0566 0.1358
63339 ENSG00000231476 novel transcript -2.0556 0.0000
63338 ENSG00000239112 SNORD123 small nucleolar RNA, C/D box 123 -2.0547 0.0000
63337 ENSG00000203805 PLPP4 phospholipid phosphatase 4 -2.0547 0.0000
63336 ENSG00000259706 HSP90B2P heat shock protein 90 beta family member 2, pseudogene -2.0541 0.0000
63335 ENSG00000168505 GBX2 gastrulation brain homeobox 2 -2.0540 0.0000
63334 ENSG00000188620 HMX3 H6 family homeobox 3 -2.0539 0.0000
63333 ENSG00000196544 BORCS6 BLOC-1 related complex subunit 6 -2.0536 0.0000
63332 ENSG00000198354 DCAF12L2 DDB1 and CUL4 associated factor 12 like 2 -2.0529 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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