Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773528

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773528


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M155Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214628 NDUFB5P2 NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2 2.8074 0.0000
2 ENSG00000222459 RNA5SP293 RNA, 5S ribosomal pseudogene 293 2.5850 0.0000
3 ENSG00000235674 LDHAP2 lactate dehydrogenase A pseudogene 2 2.5850 0.0000
4 ENSG00000245711 NADK2-AS1 NADK2 antisense RNA 1 2.5850 0.0000
5 ENSG00000233444 mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene 2.5020 0.0000
6 ENSG00000213542 ribosomal protein L7a (RPL7A) pseudogene 2.4534 0.0000
7 ENSG00000207994 MIR100 microRNA 100 2.4318 0.0000
8 ENSG00000177888 ZBTB41 zinc finger and BTB domain containing 41 2.3219 0.0021
9 ENSG00000231063 RPL6P6 ribosomal protein L6 pseudogene 6 2.3219 0.0000
10 ENSG00000233254 RPL21P134 ribosomal protein L21 pseudogene 134 2.3219 0.0021

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000250320 EDIL3-DT EDIL3 divergent transcript -1.9922 0.0000
63127 ENSG00000164032 H2AZ1 H2A.Z variant histone 1 -1.9920 0.0000
63126 ENSG00000271732 novel transcript -1.9919 0.0000
63125 ENSG00000280186 TEC -1.9908 0.0000
63124 ENSG00000186493 C5orf38 chromosome 5 open reading frame 38 -1.9907 0.0000
63123 ENSG00000256870 SLC5A8 solute carrier family 5 member 8 -1.9907 0.0000
63122 ENSG00000250709 CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough -1.9904 0.0000
63121 ENSG00000242715 CCDC169 coiled-coil domain containing 169 -1.9904 0.0000
63120 ENSG00000265943 novel transcript, antisense to RBBP8 -1.9903 0.0000
63119 ENSG00000248672 LY75-CD302 LY75-CD302 readthrough -1.9898 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...