SHOGoiN Cell Methylome: GSM2773528
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773528 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M155 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000214628 | NDUFB5P2 | NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2 | 2.8074 | 0.0000 |
| 2 | ENSG00000222459 | RNA5SP293 | RNA, 5S ribosomal pseudogene 293 | 2.5850 | 0.0000 |
| 3 | ENSG00000235674 | LDHAP2 | lactate dehydrogenase A pseudogene 2 | 2.5850 | 0.0000 |
| 4 | ENSG00000245711 | NADK2-AS1 | NADK2 antisense RNA 1 | 2.5850 | 0.0000 |
| 5 | ENSG00000233444 | mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene | 2.5020 | 0.0000 | |
| 6 | ENSG00000213542 | ribosomal protein L7a (RPL7A) pseudogene | 2.4534 | 0.0000 | |
| 7 | ENSG00000207994 | MIR100 | microRNA 100 | 2.4318 | 0.0000 |
| 8 | ENSG00000177888 | ZBTB41 | zinc finger and BTB domain containing 41 | 2.3219 | 0.0021 |
| 9 | ENSG00000231063 | ribosomal protein L6 (RPL6) pseudogene | 2.3219 | 0.0000 | |
| 10 | ENSG00000233254 | RPL21P134 | ribosomal protein L21 pseudogene 134 | 2.3219 | 0.0021 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000168032 | ENTPD3 | ectonucleoside triphosphate diphosphohydrolase 3 | -2.0571 | 0.0000 |
| 63340 | ENSG00000220758 | VN1R10P | vomeronasal 1 receptor 10 pseudogene | -2.0566 | 0.1358 |
| 63339 | ENSG00000231476 | novel transcript | -2.0556 | 0.0000 | |
| 63338 | ENSG00000239112 | SNORD123 | small nucleolar RNA, C/D box 123 | -2.0547 | 0.0000 |
| 63337 | ENSG00000203805 | PLPP4 | phospholipid phosphatase 4 | -2.0547 | 0.0000 |
| 63336 | ENSG00000259706 | HSP90B2P | heat shock protein 90 beta family member 2, pseudogene | -2.0541 | 0.0000 |
| 63335 | ENSG00000168505 | GBX2 | gastrulation brain homeobox 2 | -2.0540 | 0.0000 |
| 63334 | ENSG00000188620 | HMX3 | H6 family homeobox 3 | -2.0539 | 0.0000 |
| 63333 | ENSG00000196544 | BORCS6 | BLOC-1 related complex subunit 6 | -2.0536 | 0.0000 |
| 63332 | ENSG00000198354 | DCAF12L2 | DDB1 and CUL4 associated factor 12 like 2 | -2.0529 | 0.0000 |
