Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773528

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773528 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M155	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000214628	NDUFB5P2	NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2	2.8074	0.0000
2	ENSG00000222459	RNA5SP293	RNA, 5S ribosomal pseudogene 293	2.5850	0.0000
3	ENSG00000235674	LDHAP2	lactate dehydrogenase A pseudogene 2	2.5850	0.0000
4	ENSG00000245711	NADK2-AS1	NADK2 antisense RNA 1	2.5850	0.0000
5	ENSG00000233444		mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene	2.5020	0.0000
6	ENSG00000213542		ribosomal protein L7a (RPL7A) pseudogene	2.4534	0.0000
7	ENSG00000207994	MIR100	microRNA 100	2.4318	0.0000
8	ENSG00000177888	ZBTB41	zinc finger and BTB domain containing 41	2.3219	0.0021
9	ENSG00000231063	RPL6P6	ribosomal protein L6 pseudogene 6	2.3219	0.0000
10	ENSG00000233254	RPL21P134	ribosomal protein L21 pseudogene 134	2.3219	0.0021

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000250320	EDIL3-DT	EDIL3 divergent transcript	-1.9922	0.0000
63127	ENSG00000164032	H2AZ1	H2A.Z variant histone 1	-1.9920	0.0000
63126	ENSG00000271732		novel transcript	-1.9919	0.0000
63125	ENSG00000280186		TEC	-1.9908	0.0000
63124	ENSG00000186493	C5orf38	chromosome 5 open reading frame 38	-1.9907	0.0000
63123	ENSG00000256870	SLC5A8	solute carrier family 5 member 8	-1.9907	0.0000
63122	ENSG00000250709	CCDC169-SOHLH2	CCDC169-SOHLH2 readthrough	-1.9904	0.0000
63121	ENSG00000242715	CCDC169	coiled-coil domain containing 169	-1.9904	0.0000
63120	ENSG00000265943		novel transcript, antisense to RBBP8	-1.9903	0.0000
63119	ENSG00000248672	LY75-CD302	LY75-CD302 readthrough	-1.9898	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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