SHOGoiN Cell Methylome: GSM2773529

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773529


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M156Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248893 FAM138E family with sequence similarity 138 member E 3.0000 0.0000
2 ENSG00000230031 POTEB2 POTE ankyrin domain family member B2 2.8074 0.0000
3 ENSG00000240012 SLC9A9-AS1 SLC9A9 antisense RNA 1 2.8074 0.0000
4 ENSG00000199204 NA 2.5850 0.0002
5 ENSG00000201291 RNU1-34P RNA, U1 small nuclear 34, pseudogene 2.5850 0.0002
6 ENSG00000233805 pseudogene similar to part of pleckstrin homology, Sec7 and coiled-coil domains 1(cytohesin 1) (PSCD1) 2.5850 0.0002
7 ENSG00000249258 novel transcript 2.5411 0.0000
8 ENSG00000229338 non-metastatic cells 2, protein (NM23B) expressed in (NME2) pseudogene 2.4453 0.0000
9 ENSG00000224714 LINC02671 long intergenic non-protein coding RNA 2671 2.3900 0.0000
10 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 2.3560 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000169851 PCDH7 protocadherin 7 -2.0970 0.0000
63340 ENSG00000105447 GRWD1 glutamate rich WD repeat containing 1 -2.0960 0.0000
63339 ENSG00000224592 novel transcript -2.0950 0.0000
63338 ENSG00000163875 MEAF6 MYST/Esa1 associated factor 6 -2.0948 0.0000
63337 ENSG00000152620 NADK2 NAD kinase 2, mitochondrial -2.0946 0.0000
63336 ENSG00000261038 novel transcript -2.0944 0.0057
63335 ENSG00000278952 TEC -2.0942 0.0000
63334 ENSG00000164651 SP8 Sp8 transcription factor -2.0942 0.0000
63333 ENSG00000154473 BUB3 BUB3 mitotic checkpoint protein -2.0931 0.0000
63332 ENSG00000141522 ARHGDIA Rho GDP dissociation inhibitor alpha -2.0926 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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