SHOGoiN Cell Methylome: GSM2773530

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773530


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M157Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000173357 RNA binding motif protein, Y-linked, family 1, member A1 (RBMY1A1) pseudogene 2.9037 0.0000
2 ENSG00000228207 testis specific protein, Y-linked 1 (TSPY1) pseudogene 2.9037 0.0000
3 ENSG00000258406 Tubulin alpha-1B chain (TUB1A) pseudogene 2.9037 0.0000
4 ENSG00000229146 SNX18P4 sorting nexin 18 pseudogene 4 2.8074 0.0001
5 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene 2.8074 0.0001
6 ENSG00000276257 novel pseudogene 2.8074 0.0001
7 ENSG00000199488 RNU1-70P RNA, U1 small nuclear 70, pseudogene 2.7348 0.0000
8 ENSG00000259849 VENTXP1 VENT homeobox pseudogene 1 2.7233 0.0000
9 ENSG00000243508 DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene 2.5966 0.0000
10 ENSG00000199204 NA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000125285 SOX21 SRY-box 21 -2.1012 0.0000
63340 ENSG00000250562 RPL38P4 ribosomal protein L38 pseudogene 4 -2.1011 0.0000
63339 ENSG00000230506 novel transcript -2.1004 0.0000
63338 ENSG00000271228 novel transcript, antisense to DPY30 -2.1003 0.0000
63337 ENSG00000264735 novel transcript -2.0996 0.0000
63336 ENSG00000239732 TLR9 toll like receptor 9 -2.0994 0.0000
63335 ENSG00000117013 KCNQ4 potassium voltage-gated channel subfamily Q member 4 -2.0993 0.0000
63334 ENSG00000175264 CHST1 carbohydrate sulfotransferase 1 -2.0993 0.0000
63333 ENSG00000279135 TEC -2.0993 0.0000
63332 ENSG00000116985 BMP8B bone morphogenetic protein 8b -2.0992 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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