Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773530

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773530 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M157	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000173357		RNA binding motif protein, Y-linked, family 1, member A1 (RBMY1A1) pseudogene	2.9037	0.0000
2	ENSG00000228207		testis specific protein, Y-linked 1 (TSPY1) pseudogene	2.9037	0.0000
3	ENSG00000258406	TUBBP3	tubulin beta pseudogene 3	2.9037	0.0000
4	ENSG00000229146	SNX18P4	sorting nexin 18 pseudogene 4	2.8074	0.0001
5	ENSG00000257807		starch binding domain 1 (STBD1) pseudogene	2.8074	0.0001
6	ENSG00000276257		novel pseudogene	2.8074	0.0001
7	ENSG00000199488	RNU1-70P	RNA, U1 small nuclear 70, pseudogene	2.7348	0.0000
8	ENSG00000259849	VENTXP1	VENT homeobox pseudogene 1	2.7233	0.0000
9	ENSG00000243508	DNAJB6P7	DNAJB6 pseudogene 7	2.5966	0.0000
10	ENSG00000199204		Y RNA	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000223309	RNU6-722P	RNA, U6 small nuclear 722, pseudogene	-2.0376	0.0000
63127	ENSG00000253140		novel transcript	-2.0372	0.0000
63126	ENSG00000178974	FBXO34	F-box protein 34	-2.0371	0.0000
63125	ENSG00000162194	LBHD1	LBH domain containing 1	-2.0371	0.0000
63124	ENSG00000267227		NIMA (never in mitosis gene a)-related kinase 4 (NEK4) pseudogene	-2.0370	0.0000
63123	ENSG00000233554	B4GALT1-AS1	B4GALT1 antisense RNA 1	-2.0366	0.0000
63122	ENSG00000162552	WNT4	Wnt family member 4	-2.0359	0.0000
63121	ENSG00000183807	FAM162B	family with sequence similarity 162 member B	-2.0358	0.0000
63120	ENSG00000235090	RPL7L1P3	ribosomal protein L7 like 1 pseudogene 3	-2.0357	0.0000
63119	ENSG00000279536		tec	-2.0357	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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