Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773530
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773530
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M157
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000173357
RNA binding motif protein, Y-linked, family 1, member A1 (RBMY1A1) pseudogene
2.9037
0.0000
2
ENSG00000228207
testis specific protein, Y-linked 1 (TSPY1) pseudogene
2.9037
0.0000
3
ENSG00000258406
TUBBP3
tubulin beta pseudogene 3
2.9037
0.0000
4
ENSG00000229146
SNX18P4
sorting nexin 18 pseudogene 4
2.8074
0.0001
5
ENSG00000257807
starch binding domain 1 (STBD1) pseudogene
2.8074
0.0001
6
ENSG00000276257
novel pseudogene
2.8074
0.0001
7
ENSG00000199488
RNU1-70P
RNA, U1 small nuclear 70, pseudogene
2.7348
0.0000
8
ENSG00000259849
VENTXP1
VENT homeobox pseudogene 1
2.7233
0.0000
9
ENSG00000243508
DNAJB6P7
DNAJB6 pseudogene 7
2.5966
0.0000
10
ENSG00000199204
Y RNA
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000223309
RNU6-722P
RNA, U6 small nuclear 722, pseudogene
-2.0376
0.0000
63127
ENSG00000253140
novel transcript
-2.0372
0.0000
63126
ENSG00000178974
FBXO34
F-box protein 34
-2.0371
0.0000
63125
ENSG00000162194
LBHD1
LBH domain containing 1
-2.0371
0.0000
63124
ENSG00000267227
NIMA (never in mitosis gene a)-related kinase 4 (NEK4) pseudogene
-2.0370
0.0000
63123
ENSG00000233554
B4GALT1-AS1
B4GALT1 antisense RNA 1
-2.0366
0.0000
63122
ENSG00000162552
WNT4
Wnt family member 4
-2.0359
0.0000
63121
ENSG00000183807
FAM162B
family with sequence similarity 162 member B
-2.0358
0.0000
63120
ENSG00000235090
RPL7L1P3
ribosomal protein L7 like 1 pseudogene 3
-2.0357
0.0000
63119
ENSG00000279536
tec
-2.0357
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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