SHOGoiN Cell Methylome: GSM2773530
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773530 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M157 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000173357 | RNA binding motif protein, Y-linked, family 1, member A1 (RBMY1A1) pseudogene | 2.9037 | 0.0000 | |
| 2 | ENSG00000228207 | testis specific protein, Y-linked 1 (TSPY1) pseudogene | 2.9037 | 0.0000 | |
| 3 | ENSG00000258406 | Tubulin alpha-1B chain (TUB1A) pseudogene | 2.9037 | 0.0000 | |
| 4 | ENSG00000229146 | SNX18P4 | sorting nexin 18 pseudogene 4 | 2.8074 | 0.0001 |
| 5 | ENSG00000257807 | starch binding domain 1 (STBD1) pseudogene | 2.8074 | 0.0001 | |
| 6 | ENSG00000276257 | novel pseudogene | 2.8074 | 0.0001 | |
| 7 | ENSG00000199488 | RNU1-70P | RNA, U1 small nuclear 70, pseudogene | 2.7348 | 0.0000 |
| 8 | ENSG00000259849 | VENTXP1 | VENT homeobox pseudogene 1 | 2.7233 | 0.0000 |
| 9 | ENSG00000243508 | DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene | 2.5966 | 0.0000 | |
| 10 | ENSG00000199204 | NA | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000125285 | SOX21 | SRY-box 21 | -2.1012 | 0.0000 |
| 63340 | ENSG00000250562 | RPL38P4 | ribosomal protein L38 pseudogene 4 | -2.1011 | 0.0000 |
| 63339 | ENSG00000230506 | novel transcript | -2.1004 | 0.0000 | |
| 63338 | ENSG00000271228 | novel transcript, antisense to DPY30 | -2.1003 | 0.0000 | |
| 63337 | ENSG00000264735 | novel transcript | -2.0996 | 0.0000 | |
| 63336 | ENSG00000239732 | TLR9 | toll like receptor 9 | -2.0994 | 0.0000 |
| 63335 | ENSG00000117013 | KCNQ4 | potassium voltage-gated channel subfamily Q member 4 | -2.0993 | 0.0000 |
| 63334 | ENSG00000175264 | CHST1 | carbohydrate sulfotransferase 1 | -2.0993 | 0.0000 |
| 63333 | ENSG00000279135 | TEC | -2.0993 | 0.0000 | |
| 63332 | ENSG00000116985 | BMP8B | bone morphogenetic protein 8b | -2.0992 | 0.0000 |
