Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773530

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773530


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M157Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000173357 RNA binding motif protein, Y-linked, family 1, member A1 (RBMY1A1) pseudogene 2.9037 0.0000
2 ENSG00000228207 testis specific protein, Y-linked 1 (TSPY1) pseudogene 2.9037 0.0000
3 ENSG00000258406 TUBBP3 tubulin beta pseudogene 3 2.9037 0.0000
4 ENSG00000229146 SNX18P4 sorting nexin 18 pseudogene 4 2.8074 0.0001
5 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene 2.8074 0.0001
6 ENSG00000276257 novel pseudogene 2.8074 0.0001
7 ENSG00000199488 RNU1-70P RNA, U1 small nuclear 70, pseudogene 2.7348 0.0000
8 ENSG00000259849 VENTXP1 VENT homeobox pseudogene 1 2.7233 0.0000
9 ENSG00000243508 DNAJB6P7 DNAJB6 pseudogene 7 2.5966 0.0000
10 ENSG00000199204 Y RNA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000223309 RNU6-722P RNA, U6 small nuclear 722, pseudogene -2.0376 0.0000
63127 ENSG00000253140 novel transcript -2.0372 0.0000
63126 ENSG00000178974 FBXO34 F-box protein 34 -2.0371 0.0000
63125 ENSG00000162194 LBHD1 LBH domain containing 1 -2.0371 0.0000
63124 ENSG00000267227 NIMA (never in mitosis gene a)-related kinase 4 (NEK4) pseudogene -2.0370 0.0000
63123 ENSG00000233554 B4GALT1-AS1 B4GALT1 antisense RNA 1 -2.0366 0.0000
63122 ENSG00000162552 WNT4 Wnt family member 4 -2.0359 0.0000
63121 ENSG00000183807 FAM162B family with sequence similarity 162 member B -2.0358 0.0000
63120 ENSG00000235090 RPL7L1P3 ribosomal protein L7 like 1 pseudogene 3 -2.0357 0.0000
63119 ENSG00000279536 tec -2.0357 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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