Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773531

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773531 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M158	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000248288		ribosomal protein L5 (RPL5) pseudogene	2.8219	0.0000
2	ENSG00000237877	LINC01473	long intergenic non-protein coding RNA 1473	2.8074	0.0000
3	ENSG00000221711		NA	2.7979	0.0000
4	ENSG00000198967	OR10Z1	olfactory receptor family 10 subfamily Z member 1	2.6786	0.0000
5	ENSG00000207201	RNU1-148P	RNA, U1 small nuclear 148, pseudogene	2.5850	0.0003
6	ENSG00000254754		novel transcript	2.5850	0.0003
7	ENSG00000256211	SKP1P2	S-phase kinase associated protein 1 pseudogene 2	2.5850	0.0003
8	ENSG00000260981		novel transcript	2.5850	0.0003
9	ENSG00000252704	RN7SKP277	RN7SK pseudogene 277	2.5646	0.0000
10	ENSG00000232159	RAB9BP1	RAB9B, member RAS oncogene family pseudogene 1	2.5474	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000206043	C18orf63	chromosome 18 open reading frame 63	-2.2076	0.0000
63127	ENSG00000239257	RPL23AP1	ribosomal protein L23a pseudogene 1	-2.2075	0.0000
63126	ENSG00000229213		microtubule-actin crosslinking factor 1 (MACF1) pseudogene	-2.2073	0.0000
63125	ENSG00000229753	RPS27AP15	RPS27A pseudogene 15	-2.2072	0.0011
63124	ENSG00000238279		novel transcript	-2.2070	0.0000
63123	ENSG00000186994	KANK3	KN motif and ankyrin repeat domains 3	-2.2070	0.0000
63122	ENSG00000272031	ANKRD34A	ankyrin repeat domain 34A	-2.2070	0.0000
63121	ENSG00000177519	RPRM	reprimo, TP53 dependent G2 arrest mediator homolog	-2.2068	0.0000
63120	ENSG00000162073	PAQR4	progestin and adipoQ receptor family member 4	-2.2067	0.0000
63119	ENSG00000233251		novel transcript, antisense to CCDC85A	-2.2064	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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