Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773531

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773531


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M158Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248288 ribosomal protein L5 (RPL5) pseudogene 2.8219 0.0000
2 ENSG00000237877 LINC01473 long intergenic non-protein coding RNA 1473 2.8074 0.0000
3 ENSG00000221711 NA 2.7979 0.0000
4 ENSG00000198967 OR10Z1 olfactory receptor family 10 subfamily Z member 1 2.6786 0.0000
5 ENSG00000207201 RNU1-148P RNA, U1 small nuclear 148, pseudogene 2.5850 0.0003
6 ENSG00000254754 novel transcript 2.5850 0.0003
7 ENSG00000256211 SKP1P2 S-phase kinase associated protein 1 pseudogene 2 2.5850 0.0003
8 ENSG00000260981 novel transcript 2.5850 0.0003
9 ENSG00000252704 RN7SKP277 RN7SK pseudogene 277 2.5646 0.0000
10 ENSG00000232159 RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 2.5474 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000206043 C18orf63 chromosome 18 open reading frame 63 -2.2076 0.0000
63127 ENSG00000239257 RPL23AP1 ribosomal protein L23a pseudogene 1 -2.2075 0.0000
63126 ENSG00000229213 microtubule-actin crosslinking factor 1 (MACF1) pseudogene -2.2073 0.0000
63125 ENSG00000229753 RPS27AP15 RPS27A pseudogene 15 -2.2072 0.0011
63124 ENSG00000238279 novel transcript -2.2070 0.0000
63123 ENSG00000186994 KANK3 KN motif and ankyrin repeat domains 3 -2.2070 0.0000
63122 ENSG00000272031 ANKRD34A ankyrin repeat domain 34A -2.2070 0.0000
63121 ENSG00000177519 RPRM reprimo, TP53 dependent G2 arrest mediator homolog -2.2068 0.0000
63120 ENSG00000162073 PAQR4 progestin and adipoQ receptor family member 4 -2.2067 0.0000
63119 ENSG00000233251 novel transcript, antisense to CCDC85A -2.2064 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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