Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773531
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773531
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M158
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000248288
ribosomal protein L5 (RPL5) pseudogene
2.8219
0.0000
2
ENSG00000237877
LINC01473
long intergenic non-protein coding RNA 1473
2.8074
0.0000
3
ENSG00000221711
NA
2.7979
0.0000
4
ENSG00000198967
OR10Z1
olfactory receptor family 10 subfamily Z member 1
2.6786
0.0000
5
ENSG00000207201
RNU1-148P
RNA, U1 small nuclear 148, pseudogene
2.5850
0.0003
6
ENSG00000254754
novel transcript
2.5850
0.0003
7
ENSG00000256211
SKP1P2
S-phase kinase associated protein 1 pseudogene 2
2.5850
0.0003
8
ENSG00000260981
novel transcript
2.5850
0.0003
9
ENSG00000252704
RN7SKP277
RN7SK pseudogene 277
2.5646
0.0000
10
ENSG00000232159
RAB9BP1
RAB9B, member RAS oncogene family pseudogene 1
2.5474
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000206043
C18orf63
chromosome 18 open reading frame 63
-2.2076
0.0000
63127
ENSG00000239257
RPL23AP1
ribosomal protein L23a pseudogene 1
-2.2075
0.0000
63126
ENSG00000229213
microtubule-actin crosslinking factor 1 (MACF1) pseudogene
-2.2073
0.0000
63125
ENSG00000229753
RPS27AP15
RPS27A pseudogene 15
-2.2072
0.0011
63124
ENSG00000238279
novel transcript
-2.2070
0.0000
63123
ENSG00000186994
KANK3
KN motif and ankyrin repeat domains 3
-2.2070
0.0000
63122
ENSG00000272031
ANKRD34A
ankyrin repeat domain 34A
-2.2070
0.0000
63121
ENSG00000177519
RPRM
reprimo, TP53 dependent G2 arrest mediator homolog
-2.2068
0.0000
63120
ENSG00000162073
PAQR4
progestin and adipoQ receptor family member 4
-2.2067
0.0000
63119
ENSG00000233251
novel transcript, antisense to CCDC85A
-2.2064
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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