SHOGoiN Cell Methylome: GSM2773531
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773531 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M158 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000248288 | ribosomal protein L5 (RPL5) pseudogene | 2.8219 | 0.0000 | |
| 2 | ENSG00000237877 | LINC01473 | long intergenic non-protein coding RNA 1473 | 2.8074 | 0.0000 |
| 3 | ENSG00000221711 | NA | 2.7979 | 0.0000 | |
| 4 | ENSG00000198967 | OR10Z1 | olfactory receptor family 10 subfamily Z member 1 | 2.6786 | 0.0000 |
| 5 | ENSG00000207201 | RNU1-148P | RNA, U1 small nuclear 148, pseudogene | 2.5850 | 0.0003 |
| 6 | ENSG00000254754 | novel transcript | 2.5850 | 0.0003 | |
| 7 | ENSG00000256211 | S-phase kinase-associated protein 1 (SKP1) pseudogene | 2.5850 | 0.0003 | |
| 8 | ENSG00000260981 | novel transcript | 2.5850 | 0.0003 | |
| 9 | ENSG00000252704 | RN7SKP277 | RN7SK pseudogene 277 | 2.5646 | 0.0000 |
| 10 | ENSG00000232159 | RAB9BP1 | RAB9B, member RAS oncogene family pseudogene 1 | 2.5474 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000230872 | MFSD13B | major facilitator superfamily domain containing 13B (pseudogene) | -2.2821 | 0.0000 |
| 63340 | ENSG00000264063 | NA | -2.2804 | 0.0000 | |
| 63339 | ENSG00000263628 | MIR3155A | microRNA 3155a | -2.2800 | 0.0000 |
| 63338 | ENSG00000004399 | PLXND1 | plexin D1 | -2.2800 | 0.0000 |
| 63337 | ENSG00000115758 | ODC1 | ornithine decarboxylase 1 | -2.2792 | 0.0000 |
| 63336 | ENSG00000105327 | BBC3 | BCL2 binding component 3 | -2.2791 | 0.0000 |
| 63335 | ENSG00000163703 | CRELD1 | cysteine rich with EGF like domains 1 | -2.2790 | 0.0000 |
| 63334 | ENSG00000134590 | RTL8C | retrotransposon Gag like 8C | -2.2786 | 0.0000 |
| 63333 | ENSG00000270987 | mitogen-activated protein kinase 1 interacting protein 1-like (MAPK1IP1L) pseudogene | -2.2784 | 0.0000 | |
| 63332 | ENSG00000283634 | MIR3155B | microRNA 3155b | -2.2783 | 0.0000 |
