SHOGoiN Cell Methylome: GSM2773531

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773531


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M158Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248288 ribosomal protein L5 (RPL5) pseudogene 2.8219 0.0000
2 ENSG00000237877 LINC01473 long intergenic non-protein coding RNA 1473 2.8074 0.0000
3 ENSG00000221711 NA 2.7979 0.0000
4 ENSG00000198967 OR10Z1 olfactory receptor family 10 subfamily Z member 1 2.6786 0.0000
5 ENSG00000207201 RNU1-148P RNA, U1 small nuclear 148, pseudogene 2.5850 0.0003
6 ENSG00000254754 novel transcript 2.5850 0.0003
7 ENSG00000256211 S-phase kinase-associated protein 1 (SKP1) pseudogene 2.5850 0.0003
8 ENSG00000260981 novel transcript 2.5850 0.0003
9 ENSG00000252704 RN7SKP277 RN7SK pseudogene 277 2.5646 0.0000
10 ENSG00000232159 RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 2.5474 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000230872 MFSD13B major facilitator superfamily domain containing 13B (pseudogene) -2.2821 0.0000
63340 ENSG00000264063 NA -2.2804 0.0000
63339 ENSG00000263628 MIR3155A microRNA 3155a -2.2800 0.0000
63338 ENSG00000004399 PLXND1 plexin D1 -2.2800 0.0000
63337 ENSG00000115758 ODC1 ornithine decarboxylase 1 -2.2792 0.0000
63336 ENSG00000105327 BBC3 BCL2 binding component 3 -2.2791 0.0000
63335 ENSG00000163703 CRELD1 cysteine rich with EGF like domains 1 -2.2790 0.0000
63334 ENSG00000134590 RTL8C retrotransposon Gag like 8C -2.2786 0.0000
63333 ENSG00000270987 mitogen-activated protein kinase 1 interacting protein 1-like (MAPK1IP1L) pseudogene -2.2784 0.0000
63332 ENSG00000283634 MIR3155B microRNA 3155b -2.2783 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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