Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773532

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773532


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M159Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225972 MTND1P23 MT-ND1 pseudogene 23 2.8074 0.0000
2 ENSG00000244568 RN7SL654P RNA, 7SL, cytoplasmic 654, pseudogene 2.3850 0.0000
3 ENSG00000217268 TXNP7 thioredoxin pseudogene 7 2.3219 0.0000
4 ENSG00000236141 novel transcript 2.3219 0.0000
5 ENSG00000239808 RN7SL255P RNA, 7SL, cytoplasmic 255, pseudogene 2.3219 0.0021
6 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.3219 0.0021
7 ENSG00000241566 IGKV2D-24 immunoglobulin kappa variable 2D-24 (non-functional) 2.3219 0.0021
8 ENSG00000258044 novel transcript, antisense to PPP1R12A 2.3219 0.0021
9 ENSG00000277130 novel transcript, antisense to PPP1R12A 2.3219 0.0000
10 ENSG00000279920 LINC01651 long intergenic non-protein coding RNA 1651 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000172818 OVOL1 ovo like transcriptional repressor 1 -1.9582 0.0000
63127 ENSG00000224853 LINC00393 long intergenic non-protein coding RNA 393 -1.9581 0.0000
63126 ENSG00000260528 FAM157C family with sequence similarity 157 member C -1.9579 0.0000
63125 ENSG00000233932 CTXN2 cortexin 2 -1.9577 0.0034
63124 ENSG00000147256 ARHGAP36 Rho GTPase activating protein 36 -1.9576 0.0000
63122 ENSG00000173486 FKBP2 FKBP prolyl isomerase 2 -1.9566 0.0000
63121 ENSG00000184371 CSF1 colony stimulating factor 1 -1.9557 0.0000
63120 ENSG00000203684 IBA57-DT IBA57 divergent transcript -1.9555 0.0000
10 ENSG00000279920 LINC01651 long intergenic non-protein coding RNA 1651 2.3219 0.0000
9 ENSG00000277130 novel transcript, antisense to PPP1R12A 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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