SHOGoiN Cell Methylome: GSM2773532

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773532


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M159Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225972 MTND1P23 MT-ND1 pseudogene 23 2.8074 0.0000
2 ENSG00000244568 RN7SL654P RNA, 7SL, cytoplasmic 654, pseudogene 2.3850 0.0000
3 ENSG00000217268 TXNP7 thioredoxin pseudogene 7 2.3219 0.0000
4 ENSG00000236141 novel transcript 2.3219 0.0000
5 ENSG00000239808 RN7SL255P RNA, 7SL, cytoplasmic 255, pseudogene 2.3219 0.0021
6 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.3219 0.0021
7 ENSG00000241566 IGKV2D-24 immunoglobulin kappa variable 2D-24 (non-functional) 2.3219 0.0021
8 ENSG00000258044 novel transcript, antisense to PPP1R12A 2.3219 0.0021
9 ENSG00000277130 novel transcript, antisense to PPP1R12A 2.3219 0.0000
10 ENSG00000279920 LINC01651 long intergenic non-protein coding RNA 1651 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000177508 IRX3 iroquois homeobox 3 -2.0119 0.0000
63340 ENSG00000232912 RERE-AS1 RERE antisense RNA 1 -2.0114 0.0000
63339 ENSG00000275111 ZNF2 zinc finger protein 2 -2.0114 0.0000
63338 ENSG00000274499 coxsackie virus and adenovirus receptor (CXADR) pseudogene -2.0111 0.0000
63337 ENSG00000211639 IGLV4-60 immunoglobulin lambda variable 4-60 -2.0110 0.0049
63336 ENSG00000163273 NPPC natriuretic peptide C -2.0109 0.0000
63335 ENSG00000164983 TMEM65 transmembrane protein 65 -2.0109 0.0000
63334 ENSG00000132603 NIP7 nucleolar pre-rRNA processing protein NIP7 -2.0106 0.0000
63332 ENSG00000198205 ZXDA zinc finger X-linked duplicated A -2.0097 0.0000
10 ENSG00000279920 LINC01651 long intergenic non-protein coding RNA 1651 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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