SHOGoiN Cell Methylome: GSM2773533
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773533 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M160 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000212461 | NA | 3.0850 | 0.0000 | |
| 2 | ENSG00000248423 | clathrin, light chain (Lca) (CLTA) pseudogene | 2.9886 | 0.0000 | |
| 3 | ENSG00000201775 | RNU6-1325P | RNA, U6 small nuclear 1325, pseudogene | 2.8074 | 0.0000 |
| 4 | ENSG00000253130 | novel transcript | 2.8074 | 0.0000 | |
| 5 | ENSG00000253343 | novel transcript | 2.8074 | 0.0000 | |
| 6 | ENSG00000253774 | novel transcript | 2.8074 | 0.0000 | |
| 7 | ENSG00000279190 | novel transcript | 2.8074 | 0.0002 | |
| 8 | ENSG00000258566 | H1 histone family, member O, oocyte-specific (H1FOO) pseudogene | 2.7500 | 0.0000 | |
| 10 | ENSG00000186523 | FAM86B1 | family with sequence similarity 86 member B1 | 2.5850 | 0.0000 |
| 63332 | ENSG00000173401 | GLIPR1L1 | GLIPR1 like 1 | -2.0296 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000158553 | POM121L2 | POM121 transmembrane nucleoporin like 2 | -2.0344 | 0.0000 |
| 63340 | ENSG00000228653 | HNRNPCP7 | heterogeneous nuclear ribonucleoprotein C pseudogene 7 | -2.0343 | 0.0000 |
| 63339 | ENSG00000225337 | novel transcript | -2.0334 | 0.0000 | |
| 63338 | ENSG00000270424 | PRKC, apoptosis, WT1, regulator (PAWR) pseudogene | -2.0326 | 0.0000 | |
| 63337 | ENSG00000161956 | SENP3 | SUMO specific peptidase 3 | -2.0307 | 0.0000 |
| 63336 | ENSG00000170775 | GPR37 | G protein-coupled receptor 37 | -2.0305 | 0.0000 |
| 63335 | ENSG00000076716 | GPC4 | glypican 4 | -2.0301 | 0.0000 |
| 63334 | ENSG00000279151 | novel transcript | -2.0299 | 0.0000 | |
| 63333 | ENSG00000279113 | novel transcript | -2.0296 | 0.0000 | |
| 63332 | ENSG00000173401 | GLIPR1L1 | GLIPR1 like 1 | -2.0296 | 0.0000 |
