Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773533
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773533
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M160
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000212461
NA
3.0850
0.0000
2
ENSG00000248423
clathrin, light chain (Lca) (CLTA) pseudogene
2.9886
0.0000
3
ENSG00000201775
RNU6-1325P
RNA, U6 small nuclear 1325, pseudogene
2.8074
0.0000
4
ENSG00000253130
novel transcript
2.8074
0.0000
5
ENSG00000253343
novel transcript
2.8074
0.0000
6
ENSG00000253774
novel transcript
2.8074
0.0000
7
ENSG00000279190
novel transcript
2.8074
0.0002
8
ENSG00000258566
H1 histone family, member O, oocyte-specific (H1FOO) pseudogene
2.7500
0.0000
10
ENSG00000186523
FAM86B1
family with sequence similarity 86 member B1
2.5850
0.0000
63119
ENSG00000132182
NUP210
nucleoporin 210
-1.9787
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000281453
TGFB2-OT1
TGFB2 overlapping transcript 1
-1.9814
0.0301
63127
ENSG00000275215
RNA5-8SN3
RNA, 5.8S ribosomal N3
-1.9805
0.0000
63126
ENSG00000280739
EIF1B-AS1
EIF1B antisense RNA 1
-1.9804
0.0000
63125
ENSG00000237741
novel transcript
-1.9803
0.0000
63124
ENSG00000233251
novel transcript, antisense to CCDC85A
-1.9800
0.0000
63123
ENSG00000206920
RNY1P6
RNY1 pseudogene 6
-1.9799
0.0000
63122
ENSG00000203684
IBA57-DT
IBA57 divergent transcript
-1.9792
0.0000
63121
ENSG00000264569
DCXR-DT
DCXR divergent transcript
-1.9787
0.0000
63120
ENSG00000249992
TMEM158
transmembrane protein 158
-1.9787
0.0000
63119
ENSG00000132182
NUP210
nucleoporin 210
-1.9787
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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