Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773533

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773533


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M160Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212461 NA 3.0850 0.0000
2 ENSG00000248423 clathrin, light chain (Lca) (CLTA) pseudogene 2.9886 0.0000
3 ENSG00000201775 RNU6-1325P RNA, U6 small nuclear 1325, pseudogene 2.8074 0.0000
4 ENSG00000253130 novel transcript 2.8074 0.0000
5 ENSG00000253343 novel transcript 2.8074 0.0000
6 ENSG00000253774 novel transcript 2.8074 0.0000
7 ENSG00000279190 novel transcript 2.8074 0.0002
8 ENSG00000258566 H1 histone family, member O, oocyte-specific (H1FOO) pseudogene 2.7500 0.0000
10 ENSG00000186523 FAM86B1 family with sequence similarity 86 member B1 2.5850 0.0000
63119 ENSG00000132182 NUP210 nucleoporin 210 -1.9787 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000281453 TGFB2-OT1 TGFB2 overlapping transcript 1 -1.9814 0.0301
63127 ENSG00000275215 RNA5-8SN3 RNA, 5.8S ribosomal N3 -1.9805 0.0000
63126 ENSG00000280739 EIF1B-AS1 EIF1B antisense RNA 1 -1.9804 0.0000
63125 ENSG00000237741 novel transcript -1.9803 0.0000
63124 ENSG00000233251 novel transcript, antisense to CCDC85A -1.9800 0.0000
63123 ENSG00000206920 RNY1P6 RNY1 pseudogene 6 -1.9799 0.0000
63122 ENSG00000203684 IBA57-DT IBA57 divergent transcript -1.9792 0.0000
63121 ENSG00000264569 DCXR-DT DCXR divergent transcript -1.9787 0.0000
63120 ENSG00000249992 TMEM158 transmembrane protein 158 -1.9787 0.0000
63119 ENSG00000132182 NUP210 nucleoporin 210 -1.9787 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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