Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773534

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773534 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M161	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000181009	OR52N5	olfactory receptor family 52 subfamily N member 5	3.4594	0.0000
2	ENSG00000212455		NA	2.8074	0.0000
3	ENSG00000250190	LINC02364	long intergenic non-protein coding RNA 2364	2.8074	0.0000
4	ENSG00000253619		novel transcript	2.8074	0.0001
5	ENSG00000228226		novel transcript	2.7415	0.0000
6	ENSG00000251527		novel transcript	2.5850	0.0004
7	ENSG00000273717	RN7SL343P	RNA, 7SL, cytoplasmic 343, pseudogene	2.5850	0.0004
8	ENSG00000274570	SPDYE10P	speedy/RINGO cell cycle regulator family member E10, pseudogene	2.5850	0.0004
9	ENSG00000263396		LIM domain kinase 1 (LIMK1) pseudogene	2.4286	0.0000
10	ENSG00000259550	HNRNPA1P74	heterogeneous nuclear ribonucleoprotein A1 pseudogene 74	2.3333	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000143344	RGL1	ral guanine nucleotide dissociation stimulator like 1	-1.9924	0.0000
63127	ENSG00000135925	WNT10A	Wnt family member 10A	-1.9921	0.0000
63126	ENSG00000277223		novel transcript, sense intronic to LGR5	-1.9918	0.0000
63125	ENSG00000282143		novel transcript	-1.9918	0.0000
63124	ENSG00000179528	LBX2	ladybird homeobox 2	-1.9912	0.0000
63123	ENSG00000231788	RPL31P50	ribosomal protein L31 pseudogene 50	-1.9908	0.0000
63122	ENSG00000224421	ATP5MFP1	ATP synthase membrane subunit f pseudogene 1	-1.9908	0.0000
63121	ENSG00000159147	DONSON	DNA replication fork stabilization factor DONSON	-1.9905	0.0000
63119	ENSG00000119314	PTBP3	polypyrimidine tract binding protein 3	-1.9904	0.0000
10	ENSG00000259550	HNRNPA1P74	heterogeneous nuclear ribonucleoprotein A1 pseudogene 74	2.3333	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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