Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773534
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773534
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M161
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000181009
OR52N5
olfactory receptor family 52 subfamily N member 5
3.4594
0.0000
2
ENSG00000212455
NA
2.8074
0.0000
3
ENSG00000250190
LINC02364
long intergenic non-protein coding RNA 2364
2.8074
0.0000
4
ENSG00000253619
novel transcript
2.8074
0.0001
5
ENSG00000228226
novel transcript
2.7415
0.0000
6
ENSG00000251527
novel transcript
2.5850
0.0004
7
ENSG00000273717
RN7SL343P
RNA, 7SL, cytoplasmic 343, pseudogene
2.5850
0.0004
8
ENSG00000274570
SPDYE10P
speedy/RINGO cell cycle regulator family member E10, pseudogene
2.5850
0.0004
9
ENSG00000263396
LIM domain kinase 1 (LIMK1) pseudogene
2.4286
0.0000
10
ENSG00000259550
HNRNPA1P74
heterogeneous nuclear ribonucleoprotein A1 pseudogene 74
2.3333
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000143344
RGL1
ral guanine nucleotide dissociation stimulator like 1
-1.9924
0.0000
63127
ENSG00000135925
WNT10A
Wnt family member 10A
-1.9921
0.0000
63126
ENSG00000277223
novel transcript, sense intronic to LGR5
-1.9918
0.0000
63125
ENSG00000282143
novel transcript
-1.9918
0.0000
63124
ENSG00000179528
LBX2
ladybird homeobox 2
-1.9912
0.0000
63123
ENSG00000231788
RPL31P50
ribosomal protein L31 pseudogene 50
-1.9908
0.0000
63122
ENSG00000224421
ATP5MFP1
ATP synthase membrane subunit f pseudogene 1
-1.9908
0.0000
63121
ENSG00000159147
DONSON
DNA replication fork stabilization factor DONSON
-1.9905
0.0000
63119
ENSG00000119314
PTBP3
polypyrimidine tract binding protein 3
-1.9904
0.0000
10
ENSG00000259550
HNRNPA1P74
heterogeneous nuclear ribonucleoprotein A1 pseudogene 74
2.3333
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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