SHOGoiN Cell Methylome: GSM2773534

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773534


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M161Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000181009 OR52N5 olfactory receptor family 52 subfamily N member 5 3.4594 0.0000
2 ENSG00000212455 NA 2.8074 0.0000
3 ENSG00000250190 LINC02364 long intergenic non-protein coding RNA 2364 2.8074 0.0000
4 ENSG00000253619 novel transcript 2.8074 0.0001
5 ENSG00000228226 novel transcript 2.7415 0.0000
6 ENSG00000251527 novel transcript 2.5850 0.0004
7 ENSG00000273717 RN7SL343P RNA, 7SL, cytoplasmic 343, pseudogene 2.5850 0.0004
8 ENSG00000274570 SPDYE10P speedy/RINGO cell cycle regulator family member E10, pseudogene 2.5850 0.0004
9 ENSG00000263396 LIM domain kinase 1 (LIMK1) pseudogene 2.4286 0.0000
10 ENSG00000259550 HNRNPA1P74 heterogeneous nuclear ribonucleoprotein A1 pseudogene 74 2.3333 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000263327 TAPT1-AS1 TAPT1 antisense RNA 1 (head to head) -2.0496 0.0000
63340 ENSG00000283787 PRR33 proline rich 33 -2.0496 0.0000
63339 ENSG00000253716 MINCR MYC-induced long non-coding RNA -2.0488 0.0000
63338 ENSG00000152413 HOMER1 homer scaffold protein 1 -2.0487 0.0000
63337 ENSG00000206579 XKR4 XK related 4 -2.0478 0.0000
63336 ENSG00000242407 novel transcript -2.0462 0.0000
63335 ENSG00000142748 FCN3 ficolin 3 -2.0454 0.0000
63334 ENSG00000166126 AMN amnion associated transmembrane protein -2.0453 0.0000
63333 ENSG00000164197 RNF180 ring finger protein 180 -2.0449 0.0000
63332 ENSG00000139946 PELI2 pellino E3 ubiquitin protein ligase family member 2 -2.0446 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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