Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773534

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773534


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M161Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000181009 OR52N5 olfactory receptor family 52 subfamily N member 5 3.4594 0.0000
2 ENSG00000212455 NA 2.8074 0.0000
3 ENSG00000250190 LINC02364 long intergenic non-protein coding RNA 2364 2.8074 0.0000
4 ENSG00000253619 novel transcript 2.8074 0.0001
5 ENSG00000228226 novel transcript 2.7415 0.0000
6 ENSG00000251527 novel transcript 2.5850 0.0004
7 ENSG00000273717 RN7SL343P RNA, 7SL, cytoplasmic 343, pseudogene 2.5850 0.0004
8 ENSG00000274570 SPDYE10P speedy/RINGO cell cycle regulator family member E10, pseudogene 2.5850 0.0004
9 ENSG00000263396 LIM domain kinase 1 (LIMK1) pseudogene 2.4286 0.0000
10 ENSG00000259550 HNRNPA1P74 heterogeneous nuclear ribonucleoprotein A1 pseudogene 74 2.3333 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000143344 RGL1 ral guanine nucleotide dissociation stimulator like 1 -1.9924 0.0000
63127 ENSG00000135925 WNT10A Wnt family member 10A -1.9921 0.0000
63126 ENSG00000277223 novel transcript, sense intronic to LGR5 -1.9918 0.0000
63125 ENSG00000282143 novel transcript -1.9918 0.0000
63124 ENSG00000179528 LBX2 ladybird homeobox 2 -1.9912 0.0000
63123 ENSG00000231788 RPL31P50 ribosomal protein L31 pseudogene 50 -1.9908 0.0000
63122 ENSG00000224421 ATP5MFP1 ATP synthase membrane subunit f pseudogene 1 -1.9908 0.0000
63121 ENSG00000159147 DONSON DNA replication fork stabilization factor DONSON -1.9905 0.0000
63119 ENSG00000119314 PTBP3 polypyrimidine tract binding protein 3 -1.9904 0.0000
10 ENSG00000259550 HNRNPA1P74 heterogeneous nuclear ribonucleoprotein A1 pseudogene 74 2.3333 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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