SHOGoiN Cell Methylome: GSM2773534
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773534 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M161 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000181009 | OR52N5 | olfactory receptor family 52 subfamily N member 5 | 3.4594 | 0.0000 |
| 2 | ENSG00000212455 | NA | 2.8074 | 0.0000 | |
| 3 | ENSG00000250190 | LINC02364 | long intergenic non-protein coding RNA 2364 | 2.8074 | 0.0000 |
| 4 | ENSG00000253619 | novel transcript | 2.8074 | 0.0001 | |
| 5 | ENSG00000228226 | novel transcript | 2.7415 | 0.0000 | |
| 6 | ENSG00000251527 | novel transcript | 2.5850 | 0.0004 | |
| 7 | ENSG00000273717 | RN7SL343P | RNA, 7SL, cytoplasmic 343, pseudogene | 2.5850 | 0.0004 |
| 8 | ENSG00000274570 | SPDYE10P | speedy/RINGO cell cycle regulator family member E10, pseudogene | 2.5850 | 0.0004 |
| 9 | ENSG00000263396 | LIM domain kinase 1 (LIMK1) pseudogene | 2.4286 | 0.0000 | |
| 10 | ENSG00000259550 | HNRNPA1P74 | heterogeneous nuclear ribonucleoprotein A1 pseudogene 74 | 2.3333 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000263327 | TAPT1-AS1 | TAPT1 antisense RNA 1 (head to head) | -2.0496 | 0.0000 |
| 63340 | ENSG00000283787 | PRR33 | proline rich 33 | -2.0496 | 0.0000 |
| 63339 | ENSG00000253716 | MINCR | MYC-induced long non-coding RNA | -2.0488 | 0.0000 |
| 63338 | ENSG00000152413 | HOMER1 | homer scaffold protein 1 | -2.0487 | 0.0000 |
| 63337 | ENSG00000206579 | XKR4 | XK related 4 | -2.0478 | 0.0000 |
| 63336 | ENSG00000242407 | novel transcript | -2.0462 | 0.0000 | |
| 63335 | ENSG00000142748 | FCN3 | ficolin 3 | -2.0454 | 0.0000 |
| 63334 | ENSG00000166126 | AMN | amnion associated transmembrane protein | -2.0453 | 0.0000 |
| 63333 | ENSG00000164197 | RNF180 | ring finger protein 180 | -2.0449 | 0.0000 |
| 63332 | ENSG00000139946 | PELI2 | pellino E3 ubiquitin protein ligase family member 2 | -2.0446 | 0.0000 |
