Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773535

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773535


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M162Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249981 novel transcript 3.0000 0.0001
2 ENSG00000250387 LINC02197 long intergenic non-protein coding RNA 2197 3.0000 0.0001
3 ENSG00000146757 ZNF92 zinc finger protein 92 2.8074 0.0000
4 ENSG00000233272 PNPT1P2 polyribonucleotide nucleotidyltransferase 1 pseudogene 2 2.3774 0.0000
5 ENSG00000252149 RNA5SP315 RNA, 5S ribosomal pseudogene 315 2.3307 0.0000
6 ENSG00000229201 LINC02787 long intergenic non-protein coding RNA 2787 2.3219 0.0000
7 ENSG00000248511 novel transcript 2.3219 0.0000
8 ENSG00000254753 novel transcript 2.3219 0.0000
9 ENSG00000254895 MTCO3P15 MT-CO3 pseudogene 15 2.3219 0.0039
10 ENSG00000283246 MEP1AP1 meprin A subunit alpha pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000103343 ZNF174 zinc finger protein 174 -1.8086 0.0000
63127 ENSG00000244740 ribosomal protein L31 (RPL31) pseudogene -1.8084 0.0000
63126 ENSG00000201440 RNA5SP515 RNA, 5S ribosomal pseudogene 515 -1.8084 0.0000
63125 ENSG00000185155 MIXL1 Mix paired-like homeobox -1.8076 0.0000
63124 ENSG00000243702 RN7SL638P RNA, 7SL, cytoplasmic 638, pseudogene -1.8075 0.0000
63123 ENSG00000201868 Y RNA -1.8070 0.0000
63122 ENSG00000246528 novel transcript, antisense to SLCO5A1 -1.8066 0.0000
63121 ENSG00000165194 PCDH19 protocadherin 19 -1.8065 0.0000
63120 ENSG00000199487 Y RNA -1.8061 0.0010
63119 ENSG00000258670 novel transcript, antisense to C14orf39 -1.8060 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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