SHOGoiN Cell Methylome: GSM2773535
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773535 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M162 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000249981 | novel transcript | 3.0000 | 0.0001 | |
| 2 | ENSG00000250387 | LINC02197 | long intergenic non-protein coding RNA 2197 | 3.0000 | 0.0001 |
| 3 | ENSG00000146757 | ZNF92 | zinc finger protein 92 | 2.8074 | 0.0000 |
| 4 | ENSG00000233272 | PNPT1P2 | polyribonucleotide nucleotidyltransferase 1 pseudogene 2 | 2.3774 | 0.0000 |
| 5 | ENSG00000252149 | RNA5SP315 | RNA, 5S ribosomal pseudogene 315 | 2.3307 | 0.0000 |
| 6 | ENSG00000229201 | novel transcript | 2.3219 | 0.0000 | |
| 7 | ENSG00000248511 | novel transcript | 2.3219 | 0.0000 | |
| 8 | ENSG00000254753 | novel transcript | 2.3219 | 0.0000 | |
| 9 | ENSG00000254895 | MTCO3P15 | MT-CO3 pseudogene 15 | 2.3219 | 0.0039 |
| 10 | ENSG00000283246 | MEP1AP1 | meprin A subunit alpha pseudogene 1 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000259603 | novel transcript, antisense to IRX1 | -1.8644 | 0.0000 | |
| 63340 | ENSG00000234965 | SHISA8 | shisa family member 8 | -1.8641 | 0.0000 |
| 63339 | ENSG00000172803 | SNX32 | sorting nexin 32 | -1.8640 | 0.0000 |
| 63338 | ENSG00000277214 | novel transcript | -1.8638 | 0.0000 | |
| 63337 | ENSG00000099219 | ERMP1 | endoplasmic reticulum metallopeptidase 1 | -1.8636 | 0.0000 |
| 63336 | ENSG00000230778 | ANKRD63 | ankyrin repeat domain 63 | -1.8633 | 0.0000 |
| 63335 | ENSG00000276100 | NA | -1.8633 | 0.0000 | |
| 63334 | ENSG00000214188 | ST7-OT4 | ST7 overlapping transcript 4 | -1.8633 | 0.0000 |
| 63333 | ENSG00000201852 | RNU6-702P | RNA, U6 small nuclear 702, pseudogene | -1.8631 | 0.0000 |
| 63332 | ENSG00000183784 | C9orf66 | chromosome 9 open reading frame 66 | -1.8630 | 0.0000 |
