Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773535
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773535
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M162
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000249981
novel transcript
3.0000
0.0001
2
ENSG00000250387
LINC02197
long intergenic non-protein coding RNA 2197
3.0000
0.0001
3
ENSG00000146757
ZNF92
zinc finger protein 92
2.8074
0.0000
4
ENSG00000233272
PNPT1P2
polyribonucleotide nucleotidyltransferase 1 pseudogene 2
2.3774
0.0000
5
ENSG00000252149
RNA5SP315
RNA, 5S ribosomal pseudogene 315
2.3307
0.0000
6
ENSG00000229201
LINC02787
long intergenic non-protein coding RNA 2787
2.3219
0.0000
7
ENSG00000248511
novel transcript
2.3219
0.0000
8
ENSG00000254753
novel transcript
2.3219
0.0000
9
ENSG00000254895
MTCO3P15
MT-CO3 pseudogene 15
2.3219
0.0039
10
ENSG00000283246
MEP1AP1
meprin A subunit alpha pseudogene 1
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000103343
ZNF174
zinc finger protein 174
-1.8086
0.0000
63127
ENSG00000244740
ribosomal protein L31 (RPL31) pseudogene
-1.8084
0.0000
63126
ENSG00000201440
RNA5SP515
RNA, 5S ribosomal pseudogene 515
-1.8084
0.0000
63125
ENSG00000185155
MIXL1
Mix paired-like homeobox
-1.8076
0.0000
63124
ENSG00000243702
RN7SL638P
RNA, 7SL, cytoplasmic 638, pseudogene
-1.8075
0.0000
63123
ENSG00000201868
Y RNA
-1.8070
0.0000
63122
ENSG00000246528
novel transcript, antisense to SLCO5A1
-1.8066
0.0000
63121
ENSG00000165194
PCDH19
protocadherin 19
-1.8065
0.0000
63120
ENSG00000199487
Y RNA
-1.8061
0.0010
63119
ENSG00000258670
novel transcript, antisense to C14orf39
-1.8060
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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