Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773535

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773535 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M162	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000249981		novel transcript	3.0000	0.0001
2	ENSG00000250387	LINC02197	long intergenic non-protein coding RNA 2197	3.0000	0.0001
3	ENSG00000146757	ZNF92	zinc finger protein 92	2.8074	0.0000
4	ENSG00000233272	PNPT1P2	polyribonucleotide nucleotidyltransferase 1 pseudogene 2	2.3774	0.0000
5	ENSG00000252149	RNA5SP315	RNA, 5S ribosomal pseudogene 315	2.3307	0.0000
6	ENSG00000229201	LINC02787	long intergenic non-protein coding RNA 2787	2.3219	0.0000
7	ENSG00000248511		novel transcript	2.3219	0.0000
8	ENSG00000254753		novel transcript	2.3219	0.0000
9	ENSG00000254895	MTCO3P15	MT-CO3 pseudogene 15	2.3219	0.0039
10	ENSG00000283246	MEP1AP1	meprin A subunit alpha pseudogene 1	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000103343	ZNF174	zinc finger protein 174	-1.8086	0.0000
63127	ENSG00000244740		ribosomal protein L31 (RPL31) pseudogene	-1.8084	0.0000
63126	ENSG00000201440	RNA5SP515	RNA, 5S ribosomal pseudogene 515	-1.8084	0.0000
63125	ENSG00000185155	MIXL1	Mix paired-like homeobox	-1.8076	0.0000
63124	ENSG00000243702	RN7SL638P	RNA, 7SL, cytoplasmic 638, pseudogene	-1.8075	0.0000
63123	ENSG00000201868		Y RNA	-1.8070	0.0000
63122	ENSG00000246528		novel transcript, antisense to SLCO5A1	-1.8066	0.0000
63121	ENSG00000165194	PCDH19	protocadherin 19	-1.8065	0.0000
63120	ENSG00000199487		Y RNA	-1.8061	0.0010
63119	ENSG00000258670		novel transcript, antisense to C14orf39	-1.8060	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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