SHOGoiN Cell Methylome: GSM2773536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773536


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M163Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226683 PWWP2AP1 PWWP domain containing 2A pseudogene 1 2.8074 0.0001
2 ENSG00000225498 novel transcript 2.5850 0.0003
3 ENSG00000265859 MIR5704 microRNA 5704 2.5221 0.0000
4 ENSG00000249599 BMPR1B-DT BMPR1B divergent transcript 2.5189 0.0000
5 ENSG00000212611 NA 2.3219 0.0014
6 ENSG00000220030 proteasome subunit alpha type 4 (PROS29) pseudogene 2.3219 0.0014
7 ENSG00000221996 OR52B4 olfactory receptor family 52 subfamily B member 4 (gene/pseudogene) 2.3219 0.0014
8 ENSG00000225883 BMS1P11 BMS1 pseudogene 11 2.3219 0.0000
9 ENSG00000259941 novel transcript 2.3219 0.0000
10 ENSG00000267428 chromosome 18 open reading frame 26 (C18orf26) pseudogene 2.3219 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000271818 RN7SKP4 RN7SK pseudogene 4 -2.1256 0.0000
63340 ENSG00000197763 TXNRD3 thioredoxin reductase 3 -2.1255 0.0000
63339 ENSG00000178860 MSC musculin -2.1251 0.0000
63338 ENSG00000277881 YTH domain family, member 1 (YTHDF1) pseudogene -2.1248 0.0000
63337 ENSG00000283959 novel transcript -2.1247 0.0000
63336 ENSG00000061455 PRDM6 PR/SET domain 6 -2.1243 0.0000
63335 ENSG00000232265 novel transcript -2.1239 0.0000
63334 ENSG00000141232 TOB1 transducer of ERBB2, 1 -2.1230 0.0000
63333 ENSG00000262721 novel transcript -2.1218 0.0000
63332 ENSG00000245848 CEBPA CCAAT enhancer binding protein alpha -2.1216 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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