Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773536


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M163Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226683 PWWP2AP1 PWWP domain containing 2A pseudogene 1 2.8074 0.0001
2 ENSG00000225498 novel transcript 2.5850 0.0003
3 ENSG00000265859 MIR5704 microRNA 5704 2.5221 0.0000
4 ENSG00000249599 BMPR1B-DT BMPR1B divergent transcript 2.5189 0.0000
5 ENSG00000212611 Small nucleolar RNA SNORD30 2.3219 0.0014
6 ENSG00000220030 proteasome subunit alpha type 4 (PROS29) pseudogene 2.3219 0.0014
7 ENSG00000221996 OR52B4 olfactory receptor family 52 subfamily B member 4 2.3219 0.0014
8 ENSG00000225883 BMS1P11 BMS1 pseudogene 11 2.3219 0.0000
9 ENSG00000259941 novel transcript 2.3219 0.0000
10 ENSG00000267428 dynactin associated protein (DYNAP) pseudogene 2.3219 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000274767 novel transcript, antisense CCL3L3 -2.0633 0.0000
63127 ENSG00000228950 novel transcript -2.0632 0.0000
63126 ENSG00000223382 LINC01778 long intergenic non-protein coding RNA 1778 -2.0631 0.0000
63125 ENSG00000204052 LRRC73 leucine rich repeat containing 73 -2.0626 0.0000
63124 ENSG00000150510 FAM124A family with sequence similarity 124 member A -2.0624 0.0000
63123 ENSG00000238423 SNORD42B small nucleolar RNA, C/D box 42B -2.0616 0.0000
63122 ENSG00000172586 CHCHD1 coiled-coil-helix-coiled-coil-helix domain containing 1 -2.0613 0.0000
63121 ENSG00000131652 THOC6 THO complex 6 -2.0612 0.0000
63120 ENSG00000272297 novel protein -2.0607 0.0000
63119 ENSG00000283217 novel transcript -2.0605 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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