SHOGoiN Cell Methylome: GSM2773537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773537


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M164Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252498 RNU6-1016P RNA, U6 small nuclear 1016, pseudogene 3.0000 0.0000
2 ENSG00000264678 MIR3140 microRNA 3140 2.6923 0.0000
3 ENSG00000227358 proteasome subunit, alpha type, 7 (PSMA7) pseudogene 2.6142 0.0000
4 ENSG00000233709 MTND4P28 MT-ND4 pseudogene 28 2.6125 0.0000
5 ENSG00000224786 CETN4P centrin 4, pseudogene 2.5850 0.0000
6 ENSG00000278892 novel transcript 2.5850 0.0002
7 ENSG00000250551 MIR583HG MIR583 host gene 2.4875 0.0000
8 ENSG00000230556 pseudogene similar to part of thioredoxin domain containing 11 (TXNDC11) 2.4534 0.0000
9 ENSG00000254571 novel transcript 2.4534 0.0000
10 ENSG00000266262 MIR4428 microRNA 4428 2.4518 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000229528 novel transcript -2.2222 0.0000
63340 ENSG00000204099 NEU4 neuraminidase 4 -2.2217 0.0000
63339 ENSG00000139289 PHLDA1 pleckstrin homology like domain family A member 1 -2.2214 0.0000
63338 ENSG00000142694 EVA1B eva-1 homolog B -2.2212 0.0000
63337 ENSG00000134294 SLC38A2 solute carrier family 38 member 2 -2.2210 0.0000
63336 ENSG00000078579 FGF20 fibroblast growth factor 20 -2.2202 0.0000
63335 ENSG00000144057 ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 -2.2199 0.0000
63334 ENSG00000274079 NA -2.2197 0.0000
63333 ENSG00000250366 TUNAR TCL1 upstream neural differentiation-associated RNA -2.2197 0.0000
63332 ENSG00000272657 novel transcript -2.2192 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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