Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773537


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M164Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252498 RNU6-1016P RNA, U6 small nuclear 1016, pseudogene 3.0000 0.0000
2 ENSG00000264678 MIR3140 microRNA 3140 2.6923 0.0000
3 ENSG00000227358 proteasome subunit, alpha type, 7 (PSMA7) pseudogene 2.6142 0.0000
4 ENSG00000233709 MTND4P28 MT-ND4 pseudogene 28 2.6125 0.0000
5 ENSG00000224786 CETN4P centrin 4, pseudogene 2.5850 0.0000
6 ENSG00000278892 novel transcript 2.5850 0.0002
7 ENSG00000250551 MIR583HG MIR583 host gene 2.4875 0.0000
8 ENSG00000230556 pseudogene similar to part of thioredoxin domain containing 11 (TXNDC11) 2.4534 0.0000
9 ENSG00000254571 novel transcript 2.4534 0.0000
10 ENSG00000266262 MIR4428 microRNA 4428 2.4518 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000221823 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha -2.1511 0.0000
63127 ENSG00000232352 SEMA3B-AS1 SEMA3B antisense RNA 1 (head to head) -2.1510 0.0000
63126 ENSG00000226849 novel transcript -2.1508 0.0000
63125 ENSG00000178803 ADORA2A-AS1 ADORA2A antisense RNA 1 -2.1505 0.0000
63124 ENSG00000068078 FGFR3 fibroblast growth factor receptor 3 -2.1504 0.0000
63123 ENSG00000198108 CHSY3 chondroitin sulfate synthase 3 -2.1503 0.0000
63122 ENSG00000109787 KLF3 Kruppel like factor 3 -2.1500 0.0000
63121 ENSG00000281769 LINC01230 long intergenic non-protein coding RNA 1230 -2.1499 0.0000
63120 ENSG00000268654 MIMT1 MER1 repeat containing imprinted transcript 1 -2.1491 0.0000
63119 ENSG00000133112 TPT1 tumor protein, translationally-controlled 1 -2.1489 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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