Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773538

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773538


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M165Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248987 PRDX4P1 peroxiredoxin 4 pseudogene 1 3.0000 0.0000
2 ENSG00000281593 novel protein, ZNRF2-LINC01176 readthrough 2.8074 0.0000
3 ENSG00000202019 Y RNA 2.5850 0.0000
4 ENSG00000202379 Small nucleolar RNA SNORA70 2.5850 0.0002
5 ENSG00000224599 BMS1P12 BMS1 pseudogene 12 2.5850 0.0000
6 ENSG00000233557 NFU1P2 NFU1 iron-sulfur cluster scaffold pseudogene 2 2.5850 0.0000
7 ENSG00000276763 ribosomal protein L10 (RPL10) pseudogene 2.5850 0.0002
8 ENSG00000283130 mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene 2.5850 0.0002
9 ENSG00000273701 NA 2.5192 0.0000
10 ENSG00000282137 OR4G3P olfactory receptor family 4 subfamily G member 3 pseudogene 2.5161 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000258735 LINC00637 long intergenic non-protein coding RNA 637 -2.2261 0.0000
63127 ENSG00000072756 TRNT1 tRNA nucleotidyl transferase 1 -2.2260 0.0000
63126 ENSG00000252758 RNU6-445P RNA, U6 small nuclear 445, pseudogene -2.2259 0.0000
63125 ENSG00000235079 ZRANB2-AS1 ZRANB2 antisense RNA 1 -2.2255 0.0000
63124 ENSG00000122691 TWIST1 twist family bHLH transcription factor 1 -2.2252 0.0000
63123 ENSG00000276965 NA -2.2249 0.0000
63122 ENSG00000275307 NA -2.2249 0.0000
63121 ENSG00000253352 TUG1 taurine up-regulated 1 -2.2249 0.0000
63120 ENSG00000150051 MKX mohawk homeobox -2.2249 0.0000
63119 ENSG00000263171 novel transcript, antisense to KCTD11 -2.2244 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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