Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773538
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773538
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M165
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000248987
PRDX4P1
peroxiredoxin 4 pseudogene 1
3.0000
0.0000
2
ENSG00000281593
novel protein, ZNRF2-LINC01176 readthrough
2.8074
0.0000
3
ENSG00000202019
Y RNA
2.5850
0.0000
4
ENSG00000202379
Small nucleolar RNA SNORA70
2.5850
0.0002
5
ENSG00000224599
BMS1P12
BMS1 pseudogene 12
2.5850
0.0000
6
ENSG00000233557
NFU1P2
NFU1 iron-sulfur cluster scaffold pseudogene 2
2.5850
0.0000
7
ENSG00000276763
ribosomal protein L10 (RPL10) pseudogene
2.5850
0.0002
8
ENSG00000283130
mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene
2.5850
0.0002
9
ENSG00000273701
NA
2.5192
0.0000
10
ENSG00000282137
OR4G3P
olfactory receptor family 4 subfamily G member 3 pseudogene
2.5161
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000258735
LINC00637
long intergenic non-protein coding RNA 637
-2.2261
0.0000
63127
ENSG00000072756
TRNT1
tRNA nucleotidyl transferase 1
-2.2260
0.0000
63126
ENSG00000252758
RNU6-445P
RNA, U6 small nuclear 445, pseudogene
-2.2259
0.0000
63125
ENSG00000235079
ZRANB2-AS1
ZRANB2 antisense RNA 1
-2.2255
0.0000
63124
ENSG00000122691
TWIST1
twist family bHLH transcription factor 1
-2.2252
0.0000
63123
ENSG00000276965
NA
-2.2249
0.0000
63122
ENSG00000275307
NA
-2.2249
0.0000
63121
ENSG00000253352
TUG1
taurine up-regulated 1
-2.2249
0.0000
63120
ENSG00000150051
MKX
mohawk homeobox
-2.2249
0.0000
63119
ENSG00000263171
novel transcript, antisense to KCTD11
-2.2244
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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