SHOGoiN Cell Methylome: GSM2773538
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773538 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M165 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000248987 | PRDX4P1 | peroxiredoxin 4 pseudogene 1 | 3.0000 | 0.0000 |
| 2 | ENSG00000281593 | novel protein, ZNRF2-LINC01176 readthrough | 2.8074 | 0.0000 | |
| 3 | ENSG00000202019 | NA | 2.5850 | 0.0000 | |
| 4 | ENSG00000202379 | NA | 2.5850 | 0.0002 | |
| 5 | ENSG00000224599 | BMS1P12 | BMS1 pseudogene 12 | 2.5850 | 0.0000 |
| 6 | ENSG00000233557 | NFU1P2 | NFU1 iron-sulfur cluster scaffold pseudogene 2 | 2.5850 | 0.0000 |
| 7 | ENSG00000276763 | ribosomal protein L10 (RPL10) pseudogene | 2.5850 | 0.0002 | |
| 8 | ENSG00000283130 | mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene | 2.5850 | 0.0002 | |
| 9 | ENSG00000273701 | NA | 2.5192 | 0.0000 | |
| 10 | ENSG00000282137 | OR4G3P | olfactory receptor family 4 subfamily G member 3 pseudogene | 2.5161 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000148156 | ACTL7B | actin like 7B | -2.2899 | 0.0000 |
| 63340 | ENSG00000123447 | TYRL | tyrosinase like (pseudogene) | -2.2891 | 0.0000 |
| 63339 | ENSG00000107443 | CCNJ | cyclin J | -2.2890 | 0.0000 |
| 63338 | ENSG00000265392 | MIR4252 | microRNA 4252 | -2.2887 | 0.0000 |
| 63337 | ENSG00000247095 | MIR210HG | MIR210 host gene | -2.2884 | 0.0000 |
| 63336 | ENSG00000135040 | NAA35 | N(alpha)-acetyltransferase 35, NatC auxiliary subunit | -2.2883 | 0.0000 |
| 63335 | ENSG00000146676 | PURB | purine rich element binding protein B | -2.2882 | 0.0000 |
| 63334 | ENSG00000200320 | SNORA63 | small nucleolar RNA, H/ACA box 63 | -2.2881 | 0.0000 |
| 63333 | ENSG00000242853 | RN7SL749P | RNA, 7SL, cytoplasmic 749, pseudogene | -2.2878 | 0.0000 |
| 63332 | ENSG00000214796 | tubulin, alpha (TUBA) pseudogene | -2.2877 | 0.0000 |
