Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773538

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773538 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M165	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000248987	PRDX4P1	peroxiredoxin 4 pseudogene 1	3.0000	0.0000
2	ENSG00000281593		novel protein, ZNRF2-LINC01176 readthrough	2.8074	0.0000
3	ENSG00000202019		Y RNA	2.5850	0.0000
4	ENSG00000202379		Small nucleolar RNA SNORA70	2.5850	0.0002
5	ENSG00000224599	BMS1P12	BMS1 pseudogene 12	2.5850	0.0000
6	ENSG00000233557	NFU1P2	NFU1 iron-sulfur cluster scaffold pseudogene 2	2.5850	0.0000
7	ENSG00000276763		ribosomal protein L10 (RPL10) pseudogene	2.5850	0.0002
8	ENSG00000283130		mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene	2.5850	0.0002
9	ENSG00000273701		NA	2.5192	0.0000
10	ENSG00000282137	OR4G3P	olfactory receptor family 4 subfamily G member 3 pseudogene	2.5161	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000258735	LINC00637	long intergenic non-protein coding RNA 637	-2.2261	0.0000
63127	ENSG00000072756	TRNT1	tRNA nucleotidyl transferase 1	-2.2260	0.0000
63126	ENSG00000252758	RNU6-445P	RNA, U6 small nuclear 445, pseudogene	-2.2259	0.0000
63125	ENSG00000235079	ZRANB2-AS1	ZRANB2 antisense RNA 1	-2.2255	0.0000
63124	ENSG00000122691	TWIST1	twist family bHLH transcription factor 1	-2.2252	0.0000
63123	ENSG00000276965		NA	-2.2249	0.0000
63122	ENSG00000275307		NA	-2.2249	0.0000
63121	ENSG00000253352	TUG1	taurine up-regulated 1	-2.2249	0.0000
63120	ENSG00000150051	MKX	mohawk homeobox	-2.2249	0.0000
63119	ENSG00000263171		novel transcript, antisense to KCTD11	-2.2244	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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