SHOGoiN Cell Methylome: GSM2773539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773539


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M166Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207177 NA 3.8566 0.0000
2 ENSG00000270516 cereblon, pseudogene 3.5694 0.0000
3 ENSG00000183706 OR4N4 olfactory receptor family 4 subfamily N member 4 3.3219 0.0000
4 ENSG00000260094 LINC00564 long intergenic non-protein coding RNA 564 3.1699 0.0000
5 ENSG00000230804 C2orf27AP3 chromosome 2 open reading frame 27A pseudogene 3 3.0309 0.0000
6 ENSG00000251424 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 3.0000 0.0000
7 ENSG00000253108 novel transcript 2.9886 0.0000
8 ENSG00000238680 RNU6-1037P RNA, U6 small nuclear 1037, pseudogene 2.8074 0.0001
9 ENSG00000255501 CARD18 caspase recruitment domain family member 18 2.8074 0.0001
10 ENSG00000279733 novel transcript 2.7956 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000234753 FOXP4-AS1 FOXP4 antisense RNA 1 -2.3597 0.0000
63340 ENSG00000225981 novel transcript -2.3597 0.0000
63339 ENSG00000232260 BTF3L4P1 basic transcription factor 3 like 4 pseudogene 1 -2.3586 0.0000
63338 ENSG00000166557 TMED3 transmembrane p24 trafficking protein 3 -2.3585 0.0000
63337 ENSG00000275048 BSNDP1 barttin CLCNK type accessory beta subunit pseudogene 1 -2.3584 0.0000
63336 ENSG00000213916 RPL13P ribosomal protein L13 pseudogene -2.3581 0.0000
63335 ENSG00000109576 AADAT aminoadipate aminotransferase -2.3575 0.0000
63334 ENSG00000169181 GSG1L GSG1 like -2.3570 0.0000
63333 ENSG00000213225 NOC2LP1 NOC2 like nucleolar associated transcriptional repressor pseudogene 1 -2.3560 0.0000
63332 ENSG00000067836 ROGDI rogdi atypical leucine zipper -2.3557 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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