Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773539


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M166Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207177 NA 3.8566 0.0000
2 ENSG00000270516 cereblon, pseudogene 3.5694 0.0000
3 ENSG00000183706 OR4N4 olfactory receptor family 4 subfamily N member 4 3.3219 0.0000
4 ENSG00000260094 LINC00564 long intergenic non-protein coding RNA 564 3.1699 0.0000
5 ENSG00000230804 CDRT15P14 CDRT15 pseudogene 14 3.0309 0.0000
6 ENSG00000251424 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 3.0000 0.0000
7 ENSG00000253108 novel transcript 2.9886 0.0000
8 ENSG00000238680 RNU6-1037P RNA, U6 small nuclear 1037, pseudogene 2.8074 0.0001
9 ENSG00000255501 CARD18 caspase recruitment domain family member 18 2.8074 0.0001
10 ENSG00000279733 novel transcript 2.7956 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000270419 CAHM colon adenocarcinoma hypermethylated -2.2997 0.0000
63127 ENSG00000113356 POLR3G RNA polymerase III subunit G -2.2993 0.0000
63126 ENSG00000238933 Y RNA -2.2991 0.0000
63125 ENSG00000225280 novel transcript, antisense to NKX2-4 -2.2989 0.0000
63124 ENSG00000244953 novel transcript -2.2989 0.0000
63123 ENSG00000275358 novel transcript -2.2989 0.0000
63122 ENSG00000115844 DLX2 distal-less homeobox 2 -2.2988 0.0000
63121 ENSG00000175229 GAL3ST3 galactose-3-O-sulfotransferase 3 -2.2987 0.0000
63120 ENSG00000234936 novel transcript -2.2986 0.0000
63119 ENSG00000258051 SCO cytochrome oxidase deficient homolog 1 (yeast) (SCO1) pseudogene -2.2985 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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