Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773540
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773540
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M167
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000250768
DPP3P1
DPP3 pseudogene 1
2.8074
0.0000
2
ENSG00000259244
novel transcript
2.6962
0.0000
3
ENSG00000232982
MTCO1P45
MT-CO1 pseudogene 45
2.5207
0.0000
4
ENSG00000238789
RNU7-152P
RNA, U7 small nuclear 152 pseudogene
2.4534
0.0000
5
ENSG00000213673
SLC25A5P3
solute carrier family 25 member 5 pseudogene 3
2.3219
0.0010
6
ENSG00000222715
MIR1911
microRNA 1911
2.3219
0.0010
7
ENSG00000226680
novel transcript
2.3219
0.0010
8
ENSG00000227480
CCDC148-AS1
CCDC148 antisense RNA 1
2.3219
0.0010
9
ENSG00000231201
novel transcript
2.3219
0.0010
10
ENSG00000236666
POTEH-AS1
POTEH antisense RNA 1
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000112164
GLP1R
glucagon like peptide 1 receptor
-1.8978
0.0000
63127
ENSG00000117592
PRDX6
peroxiredoxin 6
-1.8975
0.0000
63126
ENSG00000135525
MAP7
microtubule associated protein 7
-1.8974
0.0000
63125
ENSG00000231359
ribosomal protein L31 (RPL31) pseudogene
-1.8974
0.0000
63124
ENSG00000260902
LINC02011
long intergenic non-protein coding RNA 2011
-1.8972
0.0000
63123
ENSG00000233069
novel transcript
-1.8966
0.0000
63122
ENSG00000278530
CHMP1B2P
charged multivesicular body protein 1B2, pseudogene
-1.8962
0.0229
63121
ENSG00000144015
TRIM43
tripartite motif containing 43
-1.8962
0.1416
63120
ENSG00000248184
LINC02283
long intergenic non-protein coding RNA 2283
-1.8962
0.0000
63119
ENSG00000214736
TOMM6
translocase of outer mitochondrial membrane 6
-1.8962
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...