Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773540

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773540


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M167Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250768 DPP3P1 DPP3 pseudogene 1 2.8074 0.0000
2 ENSG00000259244 novel transcript 2.6962 0.0000
3 ENSG00000232982 MTCO1P45 MT-CO1 pseudogene 45 2.5207 0.0000
4 ENSG00000238789 RNU7-152P RNA, U7 small nuclear 152 pseudogene 2.4534 0.0000
5 ENSG00000213673 SLC25A5P3 solute carrier family 25 member 5 pseudogene 3 2.3219 0.0010
6 ENSG00000222715 MIR1911 microRNA 1911 2.3219 0.0010
7 ENSG00000226680 novel transcript 2.3219 0.0010
8 ENSG00000227480 CCDC148-AS1 CCDC148 antisense RNA 1 2.3219 0.0010
9 ENSG00000231201 novel transcript 2.3219 0.0010
10 ENSG00000236666 POTEH-AS1 POTEH antisense RNA 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000112164 GLP1R glucagon like peptide 1 receptor -1.8978 0.0000
63127 ENSG00000117592 PRDX6 peroxiredoxin 6 -1.8975 0.0000
63126 ENSG00000135525 MAP7 microtubule associated protein 7 -1.8974 0.0000
63125 ENSG00000231359 ribosomal protein L31 (RPL31) pseudogene -1.8974 0.0000
63124 ENSG00000260902 LINC02011 long intergenic non-protein coding RNA 2011 -1.8972 0.0000
63123 ENSG00000233069 novel transcript -1.8966 0.0000
63122 ENSG00000278530 CHMP1B2P charged multivesicular body protein 1B2, pseudogene -1.8962 0.0229
63121 ENSG00000144015 TRIM43 tripartite motif containing 43 -1.8962 0.1416
63120 ENSG00000248184 LINC02283 long intergenic non-protein coding RNA 2283 -1.8962 0.0000
63119 ENSG00000214736 TOMM6 translocase of outer mitochondrial membrane 6 -1.8962 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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