SHOGoiN Cell Methylome: GSM2773540
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773540 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M167 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000250768 | DPP3P1 | dipeptidyl peptidase 3 pseudogene 1 | 2.8074 | 0.0000 |
| 2 | ENSG00000259244 | novel transcript | 2.6962 | 0.0000 | |
| 3 | ENSG00000232982 | MTCO1P45 | MT-CO1 pseudogene 45 | 2.5207 | 0.0000 |
| 4 | ENSG00000238789 | RNU7-152P | RNA, U7 small nuclear 152 pseudogene | 2.4534 | 0.0000 |
| 5 | ENSG00000213673 | SLC25A5P3 | solute carrier family 25 member 5 pseudogene 3 | 2.3219 | 0.0010 |
| 6 | ENSG00000222715 | MIR1911 | microRNA 1911 | 2.3219 | 0.0010 |
| 7 | ENSG00000226680 | novel transcript | 2.3219 | 0.0010 | |
| 8 | ENSG00000227480 | CCDC148-AS1 | CCDC148 antisense RNA 1 | 2.3219 | 0.0010 |
| 9 | ENSG00000231201 | novel transcript | 2.3219 | 0.0010 | |
| 10 | ENSG00000236666 | POTEH-AS1 | POTEH antisense RNA 1 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000272691 | novel transcript | -1.9660 | 0.0000 | |
| 63340 | ENSG00000275372 | NA | -1.9660 | 0.0000 | |
| 63339 | ENSG00000143994 | ABHD1 | abhydrolase domain containing 1 | -1.9657 | 0.0000 |
| 63338 | ENSG00000189292 | ALKAL2 | ALK and LTK ligand 2 | -1.9657 | 0.0000 |
| 63337 | ENSG00000230306 | BANF1P2 | barrier to autointegration factor 1 pseudogene 2 | -1.9647 | 0.0000 |
| 63336 | ENSG00000230778 | ANKRD63 | ankyrin repeat domain 63 | -1.9642 | 0.0000 |
| 63335 | ENSG00000231530 | novel transcript | -1.9639 | 0.0000 | |
| 63334 | ENSG00000001167 | NFYA | nuclear transcription factor Y subunit alpha | -1.9633 | 0.0000 |
| 63333 | ENSG00000277778 | PGM5P2 | phosphoglucomutase 5 pseudogene 2 | -1.9631 | 0.0000 |
| 63332 | ENSG00000175785 | PRIMA1 | proline rich membrane anchor 1 | -1.9617 | 0.0000 |
