SHOGoiN Cell Methylome: GSM2773541
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773541 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M168 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000213046 | EEF1A1P32 | eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 | 3.0000 | 0.0000 |
| 2 | ENSG00000253215 | novel transcript | 2.8074 | 0.0001 | |
| 3 | ENSG00000249998 | novel transcript | 2.6230 | 0.0000 | |
| 4 | ENSG00000252015 | RNU6-904P | RNA, U6 small nuclear 904, pseudogene | 2.5850 | 0.0003 |
| 5 | ENSG00000229919 | ELOCP3 | elongin C pseudogene 3 | 2.5714 | 0.0000 |
| 6 | ENSG00000197692 | CBX3P7 | chromobox 3 pseudogene 7 | 2.3219 | 0.0014 |
| 7 | ENSG00000234877 | novel transcript | 2.3219 | 0.0014 | |
| 8 | ENSG00000257587 | novel transcript | 2.3219 | 0.0000 | |
| 9 | ENSG00000259582 | novel transcript | 2.3219 | 0.0014 | |
| 10 | ENSG00000279401 | TEC | 2.3219 | 0.0014 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000117036 | ETV3 | ETS variant 3 | -2.1617 | 0.0000 |
| 63340 | ENSG00000173269 | MMRN2 | multimerin 2 | -2.1616 | 0.0000 |
| 63339 | ENSG00000226308 | novel transcript | -2.1614 | 0.0000 | |
| 63338 | ENSG00000152520 | PAN3 | poly(A) specific ribonuclease subunit PAN3 | -2.1610 | 0.0000 |
| 63337 | ENSG00000232948 | DEFB130A | defensin beta 130A | -2.1610 | 0.3588 |
| 63336 | ENSG00000128311 | TST | thiosulfate sulfurtransferase | -2.1609 | 0.0000 |
| 63335 | ENSG00000271993 | novel transcript, antisense to LRRFIP2 | -2.1600 | 0.0000 | |
| 63334 | ENSG00000282317 | novel transcript | -2.1599 | 0.0000 | |
| 63333 | ENSG00000119669 | IRF2BPL | interferon regulatory factor 2 binding protein like | -2.1597 | 0.0000 |
| 63332 | ENSG00000161132 | proline dehydrogenase (oxidase) 1 (PRODH) pseudogene | -2.1593 | 0.0000 |
