Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773541
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773541
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M168
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000213046
EEF1A1P32
eukaryotic translation elongation factor 1 alpha 1 pseudogene 32
3.0000
0.0000
2
ENSG00000253215
novel transcript
2.8074
0.0001
3
ENSG00000249998
novel transcript
2.6230
0.0000
4
ENSG00000252015
RNU6-904P
RNA, U6 small nuclear 904, pseudogene
2.5850
0.0003
5
ENSG00000229919
ELOCP3
elongin C pseudogene 3
2.5714
0.0000
6
ENSG00000197692
CBX3P7
chromobox 3 pseudogene 7
2.3219
0.0014
7
ENSG00000234877
novel transcript
2.3219
0.0014
8
ENSG00000257587
novel transcript
2.3219
0.0000
9
ENSG00000259582
novel transcript
2.3219
0.0014
10
ENSG00000279401
TEC
2.3219
0.0014
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63127
ENSG00000274617
NA
-2.0972
0.0000
63126
ENSG00000131668
BARX1
BARX homeobox 1
-2.0971
0.0000
63125
ENSG00000178695
KCTD12
potassium channel tetramerization domain containing 12
-2.0971
0.0000
63124
ENSG00000224066
novel transcript
-2.0970
0.0000
63123
ENSG00000255198
SNHG9
small nucleolar RNA host gene 9
-2.0968
0.0000
63122
ENSG00000133661
SFTPD
surfactant protein D
-2.0962
0.0000
63121
ENSG00000226963
novel transcript
-2.0962
0.0000
63120
ENSG00000100075
SLC25A1
solute carrier family 25 member 1
-2.0957
0.0000
63119
ENSG00000253537
PCDHGA7
protocadherin gamma subfamily A, 7
-2.0955
0.0000
10
ENSG00000279401
TEC
2.3219
0.0014
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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