SHOGoiN Cell Methylome: GSM2773541

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773541


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M168Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213046 EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 3.0000 0.0000
2 ENSG00000253215 novel transcript 2.8074 0.0001
3 ENSG00000249998 novel transcript 2.6230 0.0000
4 ENSG00000252015 RNU6-904P RNA, U6 small nuclear 904, pseudogene 2.5850 0.0003
5 ENSG00000229919 ELOCP3 elongin C pseudogene 3 2.5714 0.0000
6 ENSG00000197692 CBX3P7 chromobox 3 pseudogene 7 2.3219 0.0014
7 ENSG00000234877 novel transcript 2.3219 0.0014
8 ENSG00000257587 novel transcript 2.3219 0.0000
9 ENSG00000259582 novel transcript 2.3219 0.0014
10 ENSG00000279401 TEC 2.3219 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000117036 ETV3 ETS variant 3 -2.1617 0.0000
63340 ENSG00000173269 MMRN2 multimerin 2 -2.1616 0.0000
63339 ENSG00000226308 novel transcript -2.1614 0.0000
63338 ENSG00000152520 PAN3 poly(A) specific ribonuclease subunit PAN3 -2.1610 0.0000
63337 ENSG00000232948 DEFB130A defensin beta 130A -2.1610 0.3588
63336 ENSG00000128311 TST thiosulfate sulfurtransferase -2.1609 0.0000
63335 ENSG00000271993 novel transcript, antisense to LRRFIP2 -2.1600 0.0000
63334 ENSG00000282317 novel transcript -2.1599 0.0000
63333 ENSG00000119669 IRF2BPL interferon regulatory factor 2 binding protein like -2.1597 0.0000
63332 ENSG00000161132 proline dehydrogenase (oxidase) 1 (PRODH) pseudogene -2.1593 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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