Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773541

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773541


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M168Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213046 EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 3.0000 0.0000
2 ENSG00000253215 novel transcript 2.8074 0.0001
3 ENSG00000249998 novel transcript 2.6230 0.0000
4 ENSG00000252015 RNU6-904P RNA, U6 small nuclear 904, pseudogene 2.5850 0.0003
5 ENSG00000229919 ELOCP3 elongin C pseudogene 3 2.5714 0.0000
6 ENSG00000197692 CBX3P7 chromobox 3 pseudogene 7 2.3219 0.0014
7 ENSG00000234877 novel transcript 2.3219 0.0014
8 ENSG00000257587 novel transcript 2.3219 0.0000
9 ENSG00000259582 novel transcript 2.3219 0.0014
10 ENSG00000279401 TEC 2.3219 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63127 ENSG00000274617 NA -2.0972 0.0000
63126 ENSG00000131668 BARX1 BARX homeobox 1 -2.0971 0.0000
63125 ENSG00000178695 KCTD12 potassium channel tetramerization domain containing 12 -2.0971 0.0000
63124 ENSG00000224066 novel transcript -2.0970 0.0000
63123 ENSG00000255198 SNHG9 small nucleolar RNA host gene 9 -2.0968 0.0000
63122 ENSG00000133661 SFTPD surfactant protein D -2.0962 0.0000
63121 ENSG00000226963 novel transcript -2.0962 0.0000
63120 ENSG00000100075 SLC25A1 solute carrier family 25 member 1 -2.0957 0.0000
63119 ENSG00000253537 PCDHGA7 protocadherin gamma subfamily A, 7 -2.0955 0.0000
10 ENSG00000279401 TEC 2.3219 0.0014

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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