Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773542

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773542 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M169	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000275856		NA	3.0000	0.0000
2	ENSG00000261823		novel transcript	2.9727	0.0000
3	ENSG00000207138	RNU6-869P	RNA, U6 small nuclear 869, pseudogene	2.5850	0.0000
4	ENSG00000207312	RNU6-429P	RNA, U6 small nuclear 429, pseudogene	2.5850	0.0000
5	ENSG00000216616		ribosomal protein L27A (RPL27A) pseudogene	2.5850	0.0000
6	ENSG00000225581	TRIM53AP	tripartite motif containing 53A, pseudogene	2.5850	0.0002
7	ENSG00000228898	MTCO1P43	MT-CO1 pseudogene 43	2.5850	0.0000
8	ENSG00000230158	MTND1P28	MT-ND1 pseudogene 28	2.5850	0.0000
9	ENSG00000230950	MTND2P21	MT-ND2 pseudogene 21	2.5850	0.0000
10	ENSG00000278281	MIR7856	microRNA 7856	2.5850	0.0002

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000164088	PPM1M	protein phosphatase, Mg2+/Mn2+ dependent 1M	-2.0243	0.0000
63127	ENSG00000138166	DUSP5	dual specificity phosphatase 5	-2.0242	0.0000
63126	ENSG00000272050		novel transcript	-2.0235	0.0000
63125	ENSG00000124788	ATXN1	ataxin 1	-2.0233	0.0000
63124	ENSG00000215474	SKOR2	SKI family transcriptional corepressor 2	-2.0231	0.0000
63123	ENSG00000274606		NA	-2.0229	0.0000
63122	ENSG00000273004		novel transcript	-2.0226	0.0000
63121	ENSG00000240069	GPAA1P1	glycosylphosphatidylinositol anchor attachment 1 pseudogene 1	-2.0222	0.0023
63120	ENSG00000035141	FAM136A	family with sequence similarity 136 member A	-2.0219	0.0000
63119	ENSG00000187902	SHISA7	shisa family member 7	-2.0214	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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