SHOGoiN Cell Methylome: GSM2773542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773542


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M169Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000275856 NA 3.0000 0.0000
2 ENSG00000261823 novel transcript 2.9727 0.0000
3 ENSG00000207138 RNU6-869P RNA, U6 small nuclear 869, pseudogene 2.5850 0.0000
4 ENSG00000207312 RNU6-429P RNA, U6 small nuclear 429, pseudogene 2.5850 0.0000
5 ENSG00000216616 ribosomal protein L27A (RPL27A) pseudogene 2.5850 0.0000
6 ENSG00000225581 TRIM53AP tripartite motif containing 53A, pseudogene 2.5850 0.0002
7 ENSG00000228898 MTCO1P43 MT-CO1 pseudogene 43 2.5850 0.0000
8 ENSG00000230158 MTND1P28 MT-ND1 pseudogene 28 2.5850 0.0000
9 ENSG00000230950 MTND2P21 MT-ND2 pseudogene 21 2.5850 0.0000
10 ENSG00000278281 MIR7856 microRNA 7856 2.5850 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000187051 RPS19BP1 ribosomal protein S19 binding protein 1 -2.1050 0.0000
63340 ENSG00000168135 KCNJ4 potassium voltage-gated channel subfamily J member 4 -2.1042 0.0000
63339 ENSG00000175874 CREG2 cellular repressor of E1A stimulated genes 2 -2.1037 0.0000
63338 ENSG00000130487 KLHDC7B kelch domain containing 7B -2.1036 0.0000
63337 ENSG00000267959 MIR3188 microRNA 3188 -2.1035 0.0000
63336 ENSG00000164823 OSGIN2 oxidative stress induced growth inhibitor family member 2 -2.1020 0.0000
63335 ENSG00000199409 NA -2.1016 0.0223
63334 ENSG00000167925 GHDC GH3 domain containing -2.1014 0.0000
63333 ENSG00000100100 PIK3IP1 phosphoinositide-3-kinase interacting protein 1 -2.1006 0.0000
63332 ENSG00000164035 EMCN endomucin -2.0995 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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