SHOGoiN Cell Methylome: GSM2773542
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773542 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M169 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000275856 | NA | 3.0000 | 0.0000 | |
| 2 | ENSG00000261823 | novel transcript | 2.9727 | 0.0000 | |
| 3 | ENSG00000207138 | RNU6-869P | RNA, U6 small nuclear 869, pseudogene | 2.5850 | 0.0000 |
| 4 | ENSG00000207312 | RNU6-429P | RNA, U6 small nuclear 429, pseudogene | 2.5850 | 0.0000 |
| 5 | ENSG00000216616 | ribosomal protein L27A (RPL27A) pseudogene | 2.5850 | 0.0000 | |
| 6 | ENSG00000225581 | TRIM53AP | tripartite motif containing 53A, pseudogene | 2.5850 | 0.0002 |
| 7 | ENSG00000228898 | MTCO1P43 | MT-CO1 pseudogene 43 | 2.5850 | 0.0000 |
| 8 | ENSG00000230158 | MTND1P28 | MT-ND1 pseudogene 28 | 2.5850 | 0.0000 |
| 9 | ENSG00000230950 | MTND2P21 | MT-ND2 pseudogene 21 | 2.5850 | 0.0000 |
| 10 | ENSG00000278281 | MIR7856 | microRNA 7856 | 2.5850 | 0.0002 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000187051 | RPS19BP1 | ribosomal protein S19 binding protein 1 | -2.1050 | 0.0000 |
| 63340 | ENSG00000168135 | KCNJ4 | potassium voltage-gated channel subfamily J member 4 | -2.1042 | 0.0000 |
| 63339 | ENSG00000175874 | CREG2 | cellular repressor of E1A stimulated genes 2 | -2.1037 | 0.0000 |
| 63338 | ENSG00000130487 | KLHDC7B | kelch domain containing 7B | -2.1036 | 0.0000 |
| 63337 | ENSG00000267959 | MIR3188 | microRNA 3188 | -2.1035 | 0.0000 |
| 63336 | ENSG00000164823 | OSGIN2 | oxidative stress induced growth inhibitor family member 2 | -2.1020 | 0.0000 |
| 63335 | ENSG00000199409 | NA | -2.1016 | 0.0223 | |
| 63334 | ENSG00000167925 | GHDC | GH3 domain containing | -2.1014 | 0.0000 |
| 63333 | ENSG00000100100 | PIK3IP1 | phosphoinositide-3-kinase interacting protein 1 | -2.1006 | 0.0000 |
| 63332 | ENSG00000164035 | EMCN | endomucin | -2.0995 | 0.0004 |
