Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773542
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773542
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M169
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000275856
NA
3.0000
0.0000
2
ENSG00000261823
novel transcript
2.9727
0.0000
3
ENSG00000207138
RNU6-869P
RNA, U6 small nuclear 869, pseudogene
2.5850
0.0000
4
ENSG00000207312
RNU6-429P
RNA, U6 small nuclear 429, pseudogene
2.5850
0.0000
5
ENSG00000216616
ribosomal protein L27A (RPL27A) pseudogene
2.5850
0.0000
6
ENSG00000225581
TRIM53AP
tripartite motif containing 53A, pseudogene
2.5850
0.0002
7
ENSG00000228898
MTCO1P43
MT-CO1 pseudogene 43
2.5850
0.0000
8
ENSG00000230158
MTND1P28
MT-ND1 pseudogene 28
2.5850
0.0000
9
ENSG00000230950
MTND2P21
MT-ND2 pseudogene 21
2.5850
0.0000
10
ENSG00000278281
MIR7856
microRNA 7856
2.5850
0.0002
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000164088
PPM1M
protein phosphatase, Mg2+/Mn2+ dependent 1M
-2.0243
0.0000
63127
ENSG00000138166
DUSP5
dual specificity phosphatase 5
-2.0242
0.0000
63126
ENSG00000272050
novel transcript
-2.0235
0.0000
63125
ENSG00000124788
ATXN1
ataxin 1
-2.0233
0.0000
63124
ENSG00000215474
SKOR2
SKI family transcriptional corepressor 2
-2.0231
0.0000
63123
ENSG00000274606
NA
-2.0229
0.0000
63122
ENSG00000273004
novel transcript
-2.0226
0.0000
63121
ENSG00000240069
GPAA1P1
glycosylphosphatidylinositol anchor attachment 1 pseudogene 1
-2.0222
0.0023
63120
ENSG00000035141
FAM136A
family with sequence similarity 136 member A
-2.0219
0.0000
63119
ENSG00000187902
SHISA7
shisa family member 7
-2.0214
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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