Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773542


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M169Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000275856 NA 3.0000 0.0000
2 ENSG00000261823 novel transcript 2.9727 0.0000
3 ENSG00000207138 RNU6-869P RNA, U6 small nuclear 869, pseudogene 2.5850 0.0000
4 ENSG00000207312 RNU6-429P RNA, U6 small nuclear 429, pseudogene 2.5850 0.0000
5 ENSG00000216616 ribosomal protein L27A (RPL27A) pseudogene 2.5850 0.0000
6 ENSG00000225581 TRIM53AP tripartite motif containing 53A, pseudogene 2.5850 0.0002
7 ENSG00000228898 MTCO1P43 MT-CO1 pseudogene 43 2.5850 0.0000
8 ENSG00000230158 MTND1P28 MT-ND1 pseudogene 28 2.5850 0.0000
9 ENSG00000230950 MTND2P21 MT-ND2 pseudogene 21 2.5850 0.0000
10 ENSG00000278281 MIR7856 microRNA 7856 2.5850 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000164088 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M -2.0243 0.0000
63127 ENSG00000138166 DUSP5 dual specificity phosphatase 5 -2.0242 0.0000
63126 ENSG00000272050 novel transcript -2.0235 0.0000
63125 ENSG00000124788 ATXN1 ataxin 1 -2.0233 0.0000
63124 ENSG00000215474 SKOR2 SKI family transcriptional corepressor 2 -2.0231 0.0000
63123 ENSG00000274606 NA -2.0229 0.0000
63122 ENSG00000273004 novel transcript -2.0226 0.0000
63121 ENSG00000240069 GPAA1P1 glycosylphosphatidylinositol anchor attachment 1 pseudogene 1 -2.0222 0.0023
63120 ENSG00000035141 FAM136A family with sequence similarity 136 member A -2.0219 0.0000
63119 ENSG00000187902 SHISA7 shisa family member 7 -2.0214 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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