Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773543

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773543


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M170Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253423 sulfite oxidase (SUOX) pseudogene 3.0000 0.0000
2 ENSG00000223208 RNU6-1217P RNA, U6 small nuclear 1217, pseudogene 2.9358 0.0000
3 ENSG00000228074 UBBP5 ubiquitin B pseudogene 5 2.3906 0.0000
4 ENSG00000134007 ADAM20 ADAM metallopeptidase domain 20 2.3219 0.0011
5 ENSG00000234384 LINC01049 long intergenic non-protein coding RNA 1049 2.3219 0.0011
6 ENSG00000271369 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa, pseudogene 2.2581 0.0000
7 ENSG00000283885 MIR3714 microRNA 3714 2.2516 0.0000
8 ENSG00000143631 FLG filaggrin 2.2381 0.0000
9 ENSG00000257703 novel transcript 2.2146 0.0000
10 ENSG00000225616 ribosomal protein L27 (RPL27) pseudogene 2.1849 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000159596 TMEM69 transmembrane protein 69 -2.0463 0.0000
63127 ENSG00000108819 PPP1R9B protein phosphatase 1 regulatory subunit 9B -2.0460 0.0000
63126 ENSG00000245857 uncharacterized LOC100652791 -2.0458 0.0000
63125 ENSG00000278156 TSC22D1-AS1 TSC22D1 antisense RNA 1 -2.0444 0.0000
63124 ENSG00000201145 RNA5SP175 RNA, 5S ribosomal pseudogene 175 -2.0435 0.0000
63123 ENSG00000004478 FKBP4 FKBP prolyl isomerase 4 -2.0434 0.0000
63122 ENSG00000267130 novel transcript -2.0433 0.0000
63121 ENSG00000249961 TERB1 telomere repeat binding bouquet formation protein 1 -2.0429 0.0000
63120 ENSG00000281883 novel transcript -2.0424 0.0000
63119 ENSG00000181433 SAGE1 sarcoma antigen 1 -2.0423 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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