SHOGoiN Cell Methylome: GSM2773543

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773543


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M170Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253423 sulfite oxidase (SUOX) pseudogene 3.0000 0.0000
2 ENSG00000223208 RNU6-1217P RNA, U6 small nuclear 1217, pseudogene 2.9358 0.0000
3 ENSG00000228074 UBBP5 ubiquitin B pseudogene 5 2.3906 0.0000
4 ENSG00000134007 ADAM20 ADAM metallopeptidase domain 20 2.3219 0.0011
5 ENSG00000234384 LINC01049 long intergenic non-protein coding RNA 1049 2.3219 0.0011
6 ENSG00000271369 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa, pseudogene 2.2581 0.0000
7 ENSG00000283885 MIR3714 microRNA 3714 2.2516 0.0000
8 ENSG00000143631 FLG filaggrin 2.2381 0.0000
9 ENSG00000257703 novel transcript 2.2146 0.0000
10 ENSG00000225616 ribosomal protein L27 (RPL27) pseudogene 2.1849 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000124302 CHST8 carbohydrate sulfotransferase 8 -2.1123 0.0000
63340 ENSG00000260436 novel transcript, antisense to PDPK1 -2.1113 0.0000
63339 ENSG00000100030 MAPK1 mitogen-activated protein kinase 1 -2.1111 0.0000
63338 ENSG00000220771 BOLA2P3 bolA family member 2 pseudogene 3 -2.1105 0.0000
63337 ENSG00000260401 novel transcript, overlapping to P2RY2 -2.1102 0.0000
63336 ENSG00000145284 SCD5 stearoyl-CoA desaturase 5 -2.1101 0.0000
63335 ENSG00000213930 GALT galactose-1-phosphate uridylyltransferase -2.1087 0.0000
63334 ENSG00000278631 ankyrin repeat domain 57 pseudogene -2.1087 0.0000
63333 ENSG00000265279 CLUHP6 clustered mitochondria homolog pseudogene 6 -2.1084 0.0000
63332 ENSG00000106723 SPIN1 spindlin 1 -2.1083 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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