Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773544


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M171Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236433 RPL37P21 ribosomal protein L37 pseudogene 21 3.1699 0.0000
2 ENSG00000251266 LINC02429 long intergenic non-protein coding RNA 2429 3.1699 0.0000
3 ENSG00000273138 novel transcript, antisense to PON2 3.1699 0.0000
4 ENSG00000231718 LINC02789 long intergenic non-protein coding RNA 2789 3.0000 0.0000
5 ENSG00000278971 TEC 3.0000 0.0000
6 ENSG00000218475 ACTG1P18 actin gamma 1 pseudogene 18 2.9962 0.0000
7 ENSG00000241772 novel transcript 2.8617 0.0000
8 ENSG00000228309 LINC01350 long intergenic non-protein coding RNA 1350 2.8074 0.0001
9 ENSG00000232466 H3P31 H3 histone pseudogene 31 2.8074 0.0000
10 ENSG00000252066 RNU2-53P RNA, U2 small nuclear 53, pseudogene 2.7732 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000277357 NPAP1P7 nuclear pore associated protein 1 pseudogene 7 -2.3175 0.0000
63127 ENSG00000184709 LRRC26 leucine rich repeat containing 26 -2.3164 0.0000
63126 ENSG00000223723 TFDP1P2 TFDP1 pseudogene 2 -2.3163 0.0000
63125 ENSG00000242509 RN7SL156P RNA, 7SL, cytoplasmic 156, pseudogene -2.3161 0.0000
63124 ENSG00000172638 EFEMP2 EGF containing fibulin extracellular matrix protein 2 -2.3160 0.0000
63123 ENSG00000256940 PPP1R14B-AS1 PPP1R14B antisense RNA 1 -2.3159 0.0000
63122 ENSG00000173457 PPP1R14B protein phosphatase 1 regulatory inhibitor subunit 14B -2.3159 0.0000
63121 ENSG00000267062 novel transcript, antisense to PRDX2 -2.3159 0.0000
63120 ENSG00000258748 novel transcript, antisense to KIF26A -2.3157 0.0000
63119 ENSG00000162073 PAQR4 progestin and adipoQ receptor family member 4 -2.3156 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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