SHOGoiN Cell Methylome: GSM2773544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773544


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M171Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236433 RPL37P21 ribosomal protein L37 pseudogene 21 3.1699 0.0000
2 ENSG00000251266 LINC02429 long intergenic non-protein coding RNA 2429 3.1699 0.0000
3 ENSG00000273138 novel transcript, antisense to PON2 3.1699 0.0000
4 ENSG00000231718 novel transcript 3.0000 0.0000
5 ENSG00000278971 TEC 3.0000 0.0000
6 ENSG00000218475 ACTG1P18 actin gamma 1 pseudogene 18 2.9962 0.0000
7 ENSG00000241772 novel transcript 2.8617 0.0000
8 ENSG00000228309 LINC01350 long intergenic non-protein coding RNA 1350 2.8074 0.0001
9 ENSG00000232466 H3 histone, family 3B (H3.3B) (H3F3B) pseudogene 2.8074 0.0000
10 ENSG00000252066 RNU2-53P RNA, U2 small nuclear 53, pseudogene 2.7732 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000156206 CFAP161 cilia and flagella associated protein 161 -2.3927 0.0000
63340 ENSG00000189114 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 -2.3925 0.0000
63339 ENSG00000119669 IRF2BPL interferon regulatory factor 2 binding protein like -2.3918 0.0000
63338 ENSG00000279284 TEC gene -2.3913 0.0000
63337 ENSG00000148288 GBGT1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) -2.3912 0.0000
63336 ENSG00000171223 JUNB JunB proto-oncogene, AP-1 transcription factor subunit -2.3911 0.0000
63335 ENSG00000244115 DNAJC25-GNG10 DNAJC25-GNG10 readthrough -2.3911 0.0000
63334 ENSG00000253027 NA -2.3909 0.0000
63333 ENSG00000229660 novel transcript -2.3908 0.0000
63332 ENSG00000166289 PLEKHF1 pleckstrin homology and FYVE domain containing 1 -2.3906 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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