Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773545
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773545
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M172
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000200313
RNA5-8SP7
RNA, 5.8S ribosomal pseudogene 7
3.4594
0.0000
2
ENSG00000257735
novel transcript, antisense to ZNF641
3.3478
0.0000
3
ENSG00000232300
FAM215B
family with sequence similarity 215 member B
3.2857
0.0000
4
ENSG00000237072
novel pseudogene
3.2206
0.0000
5
ENSG00000222343
RN7SKP139
RN7SK pseudogene 139
3.1699
0.0000
6
ENSG00000266063
MIR4771-2
microRNA 4771-2
3.1374
0.0000
7
ENSG00000167528
ZNF641
zinc finger protein 641
3.1231
0.0000
8
ENSG00000233211
GRPEL2P1
GRPEL2 pseudogene 1
3.0000
0.0000
9
ENSG00000271652
chromosome X open reading frame 40A (CXorf40A) pseudogene
3.0000
0.0000
10
ENSG00000271986
RN7SL827P
RNA, 7SL, cytoplasmic 827, pseudogene
3.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000267110
novel transcript
-2.5087
0.0000
63127
ENSG00000154080
CHST9
carbohydrate sulfotransferase 9
-2.5082
0.0000
63126
ENSG00000199872
RNU6-942P
RNA, U6 small nuclear 942, pseudogene
-2.5077
0.0000
63125
ENSG00000259725
novel transcript
-2.5077
0.0000
63124
ENSG00000196972
SMIM10L2B
small integral membrane protein 10 like 2B
-2.5075
0.0000
63123
ENSG00000240977
RN7SL283P
RNA, 7SL, cytoplasmic 283, pseudogene
-2.5061
0.0022
63122
ENSG00000177469
CAVIN1
caveolae associated protein 1
-2.5052
0.0000
63121
ENSG00000226695
ANKRD20A10P
ankyrin repeat domain 20 family member A10, pseudogene
-2.5051
0.0000
63120
ENSG00000185950
IRS2
insulin receptor substrate 2
-2.5049
0.0000
63119
ENSG00000235499
novel transcript (LOC100132318)
-2.5048
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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