SHOGoiN Cell Methylome: GSM2773545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773545


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M172Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200313 RNA5-8SP7 RNA, 5.8S ribosomal pseudogene 7 3.4594 0.0000
2 ENSG00000257735 novel transcript, antisense to ZNF641 3.3478 0.0000
3 ENSG00000232300 FAM215B family with sequence similarity 215 member B 3.2857 0.0000
4 ENSG00000237072 novel pseudogene 3.2206 0.0000
5 ENSG00000222343 RN7SKP139 RN7SK pseudogene 139 3.1699 0.0000
6 ENSG00000266063 MIR4771-2 microRNA 4771-2 3.1374 0.0000
7 ENSG00000167528 ZNF641 zinc finger protein 641 3.1231 0.0000
8 ENSG00000233211 GRPEL2P1 GRPEL2 pseudogene 1 3.0000 0.0000
9 ENSG00000271652 chromosome X open reading frame 40A (CXorf40A) pseudogene 3.0000 0.0000
10 ENSG00000271986 RN7SL827P RNA, 7SL, cytoplasmic 827, pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000228112 interferon induced transmembrane protein 1 (9-27) (IFITM1) pseudogene -2.5938 0.0000
63340 ENSG00000198569 SLC34A3 solute carrier family 34 member 3 -2.5935 0.0000
63339 ENSG00000086289 EPDR1 ependymin related 1 -2.5935 0.0000
63338 ENSG00000232546 pseudogene similar to part of general transcription factor II, i (GTF2I) -2.5925 0.0000
63337 ENSG00000227388 novel transcript -2.5924 0.0136
63336 ENSG00000140988 RPS2 ribosomal protein S2 -2.5923 0.0000
63334 ENSG00000274709 NA -2.5920 0.0000
63333 ENSG00000244383 FAM3D-AS1 FAM3D antisense RNA 1 -2.5915 0.0001
63332 ENSG00000204177 BMS1P1 BMS1 pseudogene 1 -2.5914 0.0000
10 ENSG00000271986 RN7SL827P RNA, 7SL, cytoplasmic 827, pseudogene 3.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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