Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773545

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773545 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M172	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000200313	RNA5-8SP7	RNA, 5.8S ribosomal pseudogene 7	3.4594	0.0000
2	ENSG00000257735		novel transcript, antisense to ZNF641	3.3478	0.0000
3	ENSG00000232300	FAM215B	family with sequence similarity 215 member B	3.2857	0.0000
4	ENSG00000237072		novel pseudogene	3.2206	0.0000
5	ENSG00000222343	RN7SKP139	RN7SK pseudogene 139	3.1699	0.0000
6	ENSG00000266063	MIR4771-2	microRNA 4771-2	3.1374	0.0000
7	ENSG00000167528	ZNF641	zinc finger protein 641	3.1231	0.0000
8	ENSG00000233211	GRPEL2P1	GRPEL2 pseudogene 1	3.0000	0.0000
9	ENSG00000271652		chromosome X open reading frame 40A (CXorf40A) pseudogene	3.0000	0.0000
10	ENSG00000271986	RN7SL827P	RNA, 7SL, cytoplasmic 827, pseudogene	3.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000267110		novel transcript	-2.5087	0.0000
63127	ENSG00000154080	CHST9	carbohydrate sulfotransferase 9	-2.5082	0.0000
63126	ENSG00000199872	RNU6-942P	RNA, U6 small nuclear 942, pseudogene	-2.5077	0.0000
63125	ENSG00000259725		novel transcript	-2.5077	0.0000
63124	ENSG00000196972	SMIM10L2B	small integral membrane protein 10 like 2B	-2.5075	0.0000
63123	ENSG00000240977	RN7SL283P	RNA, 7SL, cytoplasmic 283, pseudogene	-2.5061	0.0022
63122	ENSG00000177469	CAVIN1	caveolae associated protein 1	-2.5052	0.0000
63121	ENSG00000226695	ANKRD20A10P	ankyrin repeat domain 20 family member A10, pseudogene	-2.5051	0.0000
63120	ENSG00000185950	IRS2	insulin receptor substrate 2	-2.5049	0.0000
63119	ENSG00000235499		novel transcript (LOC100132318)	-2.5048	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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