Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773545


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M172Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200313 RNA5-8SP7 RNA, 5.8S ribosomal pseudogene 7 3.4594 0.0000
2 ENSG00000257735 novel transcript, antisense to ZNF641 3.3478 0.0000
3 ENSG00000232300 FAM215B family with sequence similarity 215 member B 3.2857 0.0000
4 ENSG00000237072 novel pseudogene 3.2206 0.0000
5 ENSG00000222343 RN7SKP139 RN7SK pseudogene 139 3.1699 0.0000
6 ENSG00000266063 MIR4771-2 microRNA 4771-2 3.1374 0.0000
7 ENSG00000167528 ZNF641 zinc finger protein 641 3.1231 0.0000
8 ENSG00000233211 GRPEL2P1 GRPEL2 pseudogene 1 3.0000 0.0000
9 ENSG00000271652 chromosome X open reading frame 40A (CXorf40A) pseudogene 3.0000 0.0000
10 ENSG00000271986 RN7SL827P RNA, 7SL, cytoplasmic 827, pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000267110 novel transcript -2.5087 0.0000
63127 ENSG00000154080 CHST9 carbohydrate sulfotransferase 9 -2.5082 0.0000
63126 ENSG00000199872 RNU6-942P RNA, U6 small nuclear 942, pseudogene -2.5077 0.0000
63125 ENSG00000259725 novel transcript -2.5077 0.0000
63124 ENSG00000196972 SMIM10L2B small integral membrane protein 10 like 2B -2.5075 0.0000
63123 ENSG00000240977 RN7SL283P RNA, 7SL, cytoplasmic 283, pseudogene -2.5061 0.0022
63122 ENSG00000177469 CAVIN1 caveolae associated protein 1 -2.5052 0.0000
63121 ENSG00000226695 ANKRD20A10P ankyrin repeat domain 20 family member A10, pseudogene -2.5051 0.0000
63120 ENSG00000185950 IRS2 insulin receptor substrate 2 -2.5049 0.0000
63119 ENSG00000235499 novel transcript (LOC100132318) -2.5048 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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