SHOGoiN Cell Methylome: GSM2773545
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773545 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M172 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000200313 | RNA5-8SP7 | RNA, 5.8S ribosomal pseudogene 7 | 3.4594 | 0.0000 |
| 2 | ENSG00000257735 | novel transcript, antisense to ZNF641 | 3.3478 | 0.0000 | |
| 3 | ENSG00000232300 | FAM215B | family with sequence similarity 215 member B | 3.2857 | 0.0000 |
| 4 | ENSG00000237072 | novel pseudogene | 3.2206 | 0.0000 | |
| 5 | ENSG00000222343 | RN7SKP139 | RN7SK pseudogene 139 | 3.1699 | 0.0000 |
| 6 | ENSG00000266063 | MIR4771-2 | microRNA 4771-2 | 3.1374 | 0.0000 |
| 7 | ENSG00000167528 | ZNF641 | zinc finger protein 641 | 3.1231 | 0.0000 |
| 8 | ENSG00000233211 | GRPEL2P1 | GRPEL2 pseudogene 1 | 3.0000 | 0.0000 |
| 9 | ENSG00000271652 | chromosome X open reading frame 40A (CXorf40A) pseudogene | 3.0000 | 0.0000 | |
| 10 | ENSG00000271986 | RN7SL827P | RNA, 7SL, cytoplasmic 827, pseudogene | 3.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000228112 | interferon induced transmembrane protein 1 (9-27) (IFITM1) pseudogene | -2.5938 | 0.0000 | |
| 63340 | ENSG00000198569 | SLC34A3 | solute carrier family 34 member 3 | -2.5935 | 0.0000 |
| 63339 | ENSG00000086289 | EPDR1 | ependymin related 1 | -2.5935 | 0.0000 |
| 63338 | ENSG00000232546 | pseudogene similar to part of general transcription factor II, i (GTF2I) | -2.5925 | 0.0000 | |
| 63337 | ENSG00000227388 | novel transcript | -2.5924 | 0.0136 | |
| 63336 | ENSG00000140988 | RPS2 | ribosomal protein S2 | -2.5923 | 0.0000 |
| 63334 | ENSG00000274709 | NA | -2.5920 | 0.0000 | |
| 63333 | ENSG00000244383 | FAM3D-AS1 | FAM3D antisense RNA 1 | -2.5915 | 0.0001 |
| 63332 | ENSG00000204177 | BMS1P1 | BMS1 pseudogene 1 | -2.5914 | 0.0000 |
| 10 | ENSG00000271986 | RN7SL827P | RNA, 7SL, cytoplasmic 827, pseudogene | 3.0000 | 0.0000 |
