Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773546

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773546


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M173Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000021574 SPAST spastin 3.3219 0.0000
2 ENSG00000163807 KIAA1143 KIAA1143 3.3219 0.0000
3 ENSG00000222499 RN7SKP177 RN7SK pseudogene 177 3.3219 0.0000
4 ENSG00000242537 MRE11P1 MRE11 homolog, double strand break repair nuclease pseudogene 1 3.3219 0.0000
5 ENSG00000229722 novel transcript 3.2156 0.0000
6 ENSG00000206769 RNU6-116P RNA, U6 small nuclear 116, pseudogene 3.1699 0.0000
7 ENSG00000252574 RNU5B-6P RNA, U5B small nuclear 6, pseudogene 3.1699 0.0000
8 ENSG00000237350 CDC42P6 cell division cycle 42 pseudogene 6 3.0396 0.0000
9 ENSG00000251482 AKIRIN2P1 akirin 2 pseudogene 1 3.0222 0.0000
10 ENSG00000175664 TEX26 testis expressed 26 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000242165 RN7SL222P RNA, 7SL, cytoplasmic 222, pseudogene -2.5000 0.0013
63127 ENSG00000267725 ribosomal protein S26 (RPS26) pseudogene -2.4992 0.0000
63126 ENSG00000207302 Y RNA -2.4988 0.0000
63125 ENSG00000264359 NEK4P2 NIMA-related kinase 4 pseudogene 2 -2.4986 0.0000
63124 ENSG00000254013 MAP2K1P1 mitogen-activated protein kinase kinase 1 pseudogene 1 -2.4985 0.0000
63123 ENSG00000082497 SERTAD4 SERTA domain containing 4 -2.4977 0.0000
63122 ENSG00000086159 AQP6 aquaporin 6 -2.4974 0.0000
63121 ENSG00000108590 MED31 mediator complex subunit 31 -2.4974 0.0002
63120 ENSG00000284253 MIR1973 microRNA 1973 -2.4973 0.0504
63119 ENSG00000273536 hydroxysteroid (17-beta) dehydrogenase 6 (HSD17B6) pseudogene -2.4973 0.0539

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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