Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773546
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773546
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M173
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000021574
SPAST
spastin
3.3219
0.0000
2
ENSG00000163807
KIAA1143
KIAA1143
3.3219
0.0000
3
ENSG00000222499
RN7SKP177
RN7SK pseudogene 177
3.3219
0.0000
4
ENSG00000242537
MRE11P1
MRE11 homolog, double strand break repair nuclease pseudogene 1
3.3219
0.0000
5
ENSG00000229722
novel transcript
3.2156
0.0000
6
ENSG00000206769
RNU6-116P
RNA, U6 small nuclear 116, pseudogene
3.1699
0.0000
7
ENSG00000252574
RNU5B-6P
RNA, U5B small nuclear 6, pseudogene
3.1699
0.0000
8
ENSG00000237350
CDC42P6
cell division cycle 42 pseudogene 6
3.0396
0.0000
9
ENSG00000251482
AKIRIN2P1
akirin 2 pseudogene 1
3.0222
0.0000
10
ENSG00000175664
TEX26
testis expressed 26
3.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000242165
RN7SL222P
RNA, 7SL, cytoplasmic 222, pseudogene
-2.5000
0.0013
63127
ENSG00000267725
ribosomal protein S26 (RPS26) pseudogene
-2.4992
0.0000
63126
ENSG00000207302
Y RNA
-2.4988
0.0000
63125
ENSG00000264359
NEK4P2
NIMA-related kinase 4 pseudogene 2
-2.4986
0.0000
63124
ENSG00000254013
MAP2K1P1
mitogen-activated protein kinase kinase 1 pseudogene 1
-2.4985
0.0000
63123
ENSG00000082497
SERTAD4
SERTA domain containing 4
-2.4977
0.0000
63122
ENSG00000086159
AQP6
aquaporin 6
-2.4974
0.0000
63121
ENSG00000108590
MED31
mediator complex subunit 31
-2.4974
0.0002
63120
ENSG00000284253
MIR1973
microRNA 1973
-2.4973
0.0504
63119
ENSG00000273536
hydroxysteroid (17-beta) dehydrogenase 6 (HSD17B6) pseudogene
-2.4973
0.0539
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...