SHOGoiN Cell Methylome: GSM2773546

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773546


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M173Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000021574 SPAST spastin 3.3219 0.0000
2 ENSG00000163807 KIAA1143 KIAA1143 3.3219 0.0000
3 ENSG00000222499 RN7SKP177 RN7SK pseudogene 177 3.3219 0.0000
4 ENSG00000242537 MRE11P1 MRE11 homolog, double strand break repair nuclease pseudogene 1 3.3219 0.0000
5 ENSG00000229722 novel transcript 3.2156 0.0000
6 ENSG00000206769 RNU6-116P RNA, U6 small nuclear 116, pseudogene 3.1699 0.0000
7 ENSG00000252574 RNU5B-6P RNA, U5B small nuclear 6, pseudogene 3.1699 0.0000
8 ENSG00000237350 CDC42P6 cell division cycle 42 pseudogene 6 3.0396 0.0000
9 ENSG00000251482 AKIRIN2P1 akirin 2 pseudogene 1 3.0222 0.0000
10 ENSG00000175664 TEX26 testis expressed 26 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000232618 novel transcript -2.5851 0.0000
63340 ENSG00000283544 primase, DNA, polypeptide 2 (58kDa) (PRIM2) pseudogene -2.5850 0.0539
63339 ENSG00000280904 NA -2.5850 0.5929
63338 ENSG00000275325 PDCD6IPP1 PDCD6IP pseudogene 1 -2.5850 0.0539
63337 ENSG00000273756 golgin subfamily A member 6-like protein 6 -2.5850 0.0030
63336 ENSG00000272344 SNORD114-21 small nucleolar RNA, C/D box 114-21 -2.5850 0.5929
63335 ENSG00000271978 novel transcript -2.5850 0.0124
63334 ENSG00000271697 gephyrin (GPHN) pseudogene -2.5850 0.1312
63333 ENSG00000271373 NANOGP3 Nanog homeobox pseudogene 3 -2.5850 0.0124
63332 ENSG00000269136 BRI3BPP1 BRI3 binding protein pseudogene 1 -2.5850 0.5929

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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