SHOGoiN Cell Methylome: GSM2773546
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773546 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M173 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000021574 | SPAST | spastin | 3.3219 | 0.0000 |
| 2 | ENSG00000163807 | KIAA1143 | KIAA1143 | 3.3219 | 0.0000 |
| 3 | ENSG00000222499 | RN7SKP177 | RN7SK pseudogene 177 | 3.3219 | 0.0000 |
| 4 | ENSG00000242537 | MRE11P1 | MRE11 homolog, double strand break repair nuclease pseudogene 1 | 3.3219 | 0.0000 |
| 5 | ENSG00000229722 | novel transcript | 3.2156 | 0.0000 | |
| 6 | ENSG00000206769 | RNU6-116P | RNA, U6 small nuclear 116, pseudogene | 3.1699 | 0.0000 |
| 7 | ENSG00000252574 | RNU5B-6P | RNA, U5B small nuclear 6, pseudogene | 3.1699 | 0.0000 |
| 8 | ENSG00000237350 | CDC42P6 | cell division cycle 42 pseudogene 6 | 3.0396 | 0.0000 |
| 9 | ENSG00000251482 | AKIRIN2P1 | akirin 2 pseudogene 1 | 3.0222 | 0.0000 |
| 10 | ENSG00000175664 | TEX26 | testis expressed 26 | 3.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000232618 | novel transcript | -2.5851 | 0.0000 | |
| 63340 | ENSG00000283544 | primase, DNA, polypeptide 2 (58kDa) (PRIM2) pseudogene | -2.5850 | 0.0539 | |
| 63339 | ENSG00000280904 | NA | -2.5850 | 0.5929 | |
| 63338 | ENSG00000275325 | PDCD6IPP1 | PDCD6IP pseudogene 1 | -2.5850 | 0.0539 |
| 63337 | ENSG00000273756 | golgin subfamily A member 6-like protein 6 | -2.5850 | 0.0030 | |
| 63336 | ENSG00000272344 | SNORD114-21 | small nucleolar RNA, C/D box 114-21 | -2.5850 | 0.5929 |
| 63335 | ENSG00000271978 | novel transcript | -2.5850 | 0.0124 | |
| 63334 | ENSG00000271697 | gephyrin (GPHN) pseudogene | -2.5850 | 0.1312 | |
| 63333 | ENSG00000271373 | NANOGP3 | Nanog homeobox pseudogene 3 | -2.5850 | 0.0124 |
| 63332 | ENSG00000269136 | BRI3BPP1 | BRI3 binding protein pseudogene 1 | -2.5850 | 0.5929 |
