Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773546

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773546 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M173	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000021574	SPAST	spastin	3.3219	0.0000
2	ENSG00000163807	KIAA1143	KIAA1143	3.3219	0.0000
3	ENSG00000222499	RN7SKP177	RN7SK pseudogene 177	3.3219	0.0000
4	ENSG00000242537	MRE11P1	MRE11 homolog, double strand break repair nuclease pseudogene 1	3.3219	0.0000
5	ENSG00000229722		novel transcript	3.2156	0.0000
6	ENSG00000206769	RNU6-116P	RNA, U6 small nuclear 116, pseudogene	3.1699	0.0000
7	ENSG00000252574	RNU5B-6P	RNA, U5B small nuclear 6, pseudogene	3.1699	0.0000
8	ENSG00000237350	CDC42P6	cell division cycle 42 pseudogene 6	3.0396	0.0000
9	ENSG00000251482	AKIRIN2P1	akirin 2 pseudogene 1	3.0222	0.0000
10	ENSG00000175664	TEX26	testis expressed 26	3.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000242165	RN7SL222P	RNA, 7SL, cytoplasmic 222, pseudogene	-2.5000	0.0013
63127	ENSG00000267725		ribosomal protein S26 (RPS26) pseudogene	-2.4992	0.0000
63126	ENSG00000207302		Y RNA	-2.4988	0.0000
63125	ENSG00000264359	NEK4P2	NIMA-related kinase 4 pseudogene 2	-2.4986	0.0000
63124	ENSG00000254013	MAP2K1P1	mitogen-activated protein kinase kinase 1 pseudogene 1	-2.4985	0.0000
63123	ENSG00000082497	SERTAD4	SERTA domain containing 4	-2.4977	0.0000
63122	ENSG00000086159	AQP6	aquaporin 6	-2.4974	0.0000
63121	ENSG00000108590	MED31	mediator complex subunit 31	-2.4974	0.0002
63120	ENSG00000284253	MIR1973	microRNA 1973	-2.4973	0.0504
63119	ENSG00000273536		hydroxysteroid (17-beta) dehydrogenase 6 (HSD17B6) pseudogene	-2.4973	0.0539

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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