Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773547
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773547
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M174
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000267524
RPSAP57
ribosomal protein SA pseudogene 57
3.3219
0.0000
2
ENSG00000212539
Small nucleolar RNA U3
3.1699
0.0000
3
ENSG00000258892
novel transcript
3.1699
0.0000
4
ENSG00000198019
FCGR1B
Fc fragment of IgG receptor Ib
3.0000
0.0000
5
ENSG00000221930
DENND10P1
DENND10 pseudogene 1
3.0000
0.0000
6
ENSG00000252537
NA
3.0000
0.0000
7
ENSG00000233852
novel transcript
2.9886
0.0000
8
ENSG00000203942
C10orf62
chromosome 10 open reading frame 62
2.8074
0.0001
9
ENSG00000224152
novel transcript, antisense to BAZ2B
2.8074
0.0001
10
ENSG00000233663
melanoma antigen pseudogene
2.8074
0.0001
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000073861
TBX21
T-box transcription factor 21
-2.1283
0.0000
63127
ENSG00000262358
Novel protein, antisense to ITGAE
-2.1275
0.0000
63126
ENSG00000170545
SMAGP
small cell adhesion glycoprotein
-2.1267
0.0000
63125
ENSG00000259884
NR4A1AS
NR4A1 antisense RNA
-2.1257
0.0000
63124
ENSG00000143761
ARF1
ADP ribosylation factor 1
-2.1255
0.0000
63123
ENSG00000259658
ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2) pseudogene
-2.1252
0.0000
63122
ENSG00000166148
AVPR1A
arginine vasopressin receptor 1A
-2.1251
0.0000
63121
ENSG00000136888
ATP6V1G1
ATPase H+ transporting V1 subunit G1
-2.1248
0.0000
63120
ENSG00000181418
DDN
dendrin
-2.1245
0.0000
63119
ENSG00000235328
ribosomal protein L31 (RPL31) pseudogene
-2.1244
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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