Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773547

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773547 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M174	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000267524	RPSAP57	ribosomal protein SA pseudogene 57	3.3219	0.0000
2	ENSG00000212539		Small nucleolar RNA U3	3.1699	0.0000
3	ENSG00000258892		novel transcript	3.1699	0.0000
4	ENSG00000198019	FCGR1B	Fc fragment of IgG receptor Ib	3.0000	0.0000
5	ENSG00000221930	DENND10P1	DENND10 pseudogene 1	3.0000	0.0000
6	ENSG00000252537		NA	3.0000	0.0000
7	ENSG00000233852		novel transcript	2.9886	0.0000
8	ENSG00000203942	C10orf62	chromosome 10 open reading frame 62	2.8074	0.0001
9	ENSG00000224152		novel transcript, antisense to BAZ2B	2.8074	0.0001
10	ENSG00000233663		melanoma antigen pseudogene	2.8074	0.0001

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000073861	TBX21	T-box transcription factor 21	-2.1283	0.0000
63127	ENSG00000262358		Novel protein, antisense to ITGAE	-2.1275	0.0000
63126	ENSG00000170545	SMAGP	small cell adhesion glycoprotein	-2.1267	0.0000
63125	ENSG00000259884	NR4A1AS	NR4A1 antisense RNA	-2.1257	0.0000
63124	ENSG00000143761	ARF1	ADP ribosylation factor 1	-2.1255	0.0000
63123	ENSG00000259658		ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2) pseudogene	-2.1252	0.0000
63122	ENSG00000166148	AVPR1A	arginine vasopressin receptor 1A	-2.1251	0.0000
63121	ENSG00000136888	ATP6V1G1	ATPase H+ transporting V1 subunit G1	-2.1248	0.0000
63120	ENSG00000181418	DDN	dendrin	-2.1245	0.0000
63119	ENSG00000235328		ribosomal protein L31 (RPL31) pseudogene	-2.1244	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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