Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773548

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773548


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M175Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243861 novel transcript 2.6962 0.0000
2 ENSG00000229082 OR5AW1P olfactory receptor family 5 subfamily AW member 1 pseudogene 2.5850 0.0003
3 ENSG00000279485 TEC 2.4130 0.0000
4 ENSG00000067646 ZFY zinc finger protein Y-linked 2.3219 0.0014
5 ENSG00000201744 RNU6-34P RNA, U6 small nuclear 34, pseudogene 2.3219 0.0014
6 ENSG00000212434 Small nucleolar RNA U3 2.3219 0.0014
7 ENSG00000221996 OR52B4 olfactory receptor family 52 subfamily B member 4 2.3219 0.0014
8 ENSG00000229163 NAP1L1P2 nucleosome assembly protein 1 like 1 pseudogene 2 2.3219 0.0014
9 ENSG00000278847 novel transcript 2.3219 0.0014
10 ENSG00000253327 RAD21-AS1 RAD21 antisense RNA 1 2.1610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000143768 LEFTY2 left-right determination factor 2 -1.8578 0.0000
63127 ENSG00000186352 ANKRD37 ankyrin repeat domain 37 -1.8576 0.0000
63126 ENSG00000153879 CEBPG CCAAT enhancer binding protein gamma -1.8576 0.0000
63125 ENSG00000259173 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G (ATP5L) pseudogene -1.8574 0.0000
63124 ENSG00000143469 SYT14 synaptotagmin 14 -1.8574 0.0000
63123 ENSG00000088882 CPXM1 carboxypeptidase X, M14 family member 1 -1.8570 0.0000
63122 ENSG00000114902 SPCS1 signal peptidase complex subunit 1 -1.8568 0.0000
63121 ENSG00000117632 STMN1 stathmin 1 -1.8566 0.0000
63120 ENSG00000272836 novel transcript, antisense to SELO -1.8565 0.0000
63119 ENSG00000259836 AGGF1P6 angiogenic factor with G-patch and FHA domains 1 pseudogene 6 -1.8564 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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