Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773549
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773549
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M176
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000230022
FNTAP2
farnesyltransferase, CAAX box, alpha pseudogene 2
3.1699
0.0000
2
ENSG00000258930
tetratricopeptide repeat domain 7B (TTC7B) pseudogene
3.0303
0.0000
3
ENSG00000236818
ARL5AP2
ARL5A pseudogene 2
2.8937
0.0000
4
ENSG00000235612
novel transcript
2.8575
0.0000
5
ENSG00000250223
LINC01216
long intergenic non-protein coding RNA 1216
2.8074
0.0000
6
ENSG00000253383
60S ribosomal protein L36 (RPL36) pseudogene
2.8074
0.0001
7
ENSG00000236921
novel transcript
2.7974
0.0000
8
ENSG00000207440
RNU6-541P
RNA, U6 small nuclear 541, pseudogene
2.7273
0.0000
9
ENSG00000213731
RAB5CP1
RAB5C, member RAS oncogene family pseudogene 1
2.6010
0.0000
10
ENSG00000170790
OR10A2
olfactory receptor family 10 subfamily A member 2
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63127
ENSG00000232936
novel transcript
-2.0593
0.0000
63126
ENSG00000225836
novel transcript
-2.0593
0.0000
63125
ENSG00000273472
novel transcript
-2.0593
0.0000
63123
ENSG00000006625
GGCT
gamma-glutamylcyclotransferase
-2.0588
0.0000
63122
ENSG00000222987
RN7SKP68
RN7SK pseudogene 68
-2.0584
0.0000
63121
ENSG00000264483
MIR5008
microRNA 5008
-2.0581
0.0000
63120
ENSG00000125631
HTR5BP
5-hydroxytryptamine receptor 5B, pseudogene
-2.0581
0.0000
63119
ENSG00000253409
TRBV7-4
T cell receptor beta variable 7-4
-2.0580
0.0000
10
ENSG00000170790
OR10A2
olfactory receptor family 10 subfamily A member 2
2.5850
0.0000
9
ENSG00000213731
RAB5CP1
RAB5C, member RAS oncogene family pseudogene 1
2.6010
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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