Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773549

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773549


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M176Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230022 FNTAP2 farnesyltransferase, CAAX box, alpha pseudogene 2 3.1699 0.0000
2 ENSG00000258930 tetratricopeptide repeat domain 7B (TTC7B) pseudogene 3.0303 0.0000
3 ENSG00000236818 ARL5AP2 ARL5A pseudogene 2 2.8937 0.0000
4 ENSG00000235612 novel transcript 2.8575 0.0000
5 ENSG00000250223 LINC01216 long intergenic non-protein coding RNA 1216 2.8074 0.0000
6 ENSG00000253383 60S ribosomal protein L36 (RPL36) pseudogene 2.8074 0.0001
7 ENSG00000236921 novel transcript 2.7974 0.0000
8 ENSG00000207440 RNU6-541P RNA, U6 small nuclear 541, pseudogene 2.7273 0.0000
9 ENSG00000213731 RAB5CP1 RAB5C, member RAS oncogene family pseudogene 1 2.6010 0.0000
10 ENSG00000170790 OR10A2 olfactory receptor family 10 subfamily A member 2 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63127 ENSG00000232936 novel transcript -2.0593 0.0000
63126 ENSG00000225836 novel transcript -2.0593 0.0000
63125 ENSG00000273472 novel transcript -2.0593 0.0000
63123 ENSG00000006625 GGCT gamma-glutamylcyclotransferase -2.0588 0.0000
63122 ENSG00000222987 RN7SKP68 RN7SK pseudogene 68 -2.0584 0.0000
63121 ENSG00000264483 MIR5008 microRNA 5008 -2.0581 0.0000
63120 ENSG00000125631 HTR5BP 5-hydroxytryptamine receptor 5B, pseudogene -2.0581 0.0000
63119 ENSG00000253409 TRBV7-4 T cell receptor beta variable 7-4 -2.0580 0.0000
10 ENSG00000170790 OR10A2 olfactory receptor family 10 subfamily A member 2 2.5850 0.0000
9 ENSG00000213731 RAB5CP1 RAB5C, member RAS oncogene family pseudogene 1 2.6010 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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