SHOGoiN Cell Methylome: GSM2773549
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773549 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M176 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000230022 | FNTAP2 | farnesyltransferase, CAAX box, alpha pseudogene 2 | 3.1699 | 0.0000 |
| 2 | ENSG00000258930 | tetratricopeptide repeat domain 7B (TTC7B) pseudogene | 3.0303 | 0.0000 | |
| 3 | ENSG00000236818 | ARL5AP2 | ADP ribosylation factor like GTPase 5A pseudogene 2 | 2.8937 | 0.0000 |
| 4 | ENSG00000235612 | novel transcript | 2.8575 | 0.0000 | |
| 5 | ENSG00000250223 | LINC01216 | long intergenic non-protein coding RNA 1216 | 2.8074 | 0.0000 |
| 6 | ENSG00000253383 | 60S ribosomal protein L36 (RPL36) pseudogene | 2.8074 | 0.0001 | |
| 7 | ENSG00000236921 | novel transcript | 2.7974 | 0.0000 | |
| 8 | ENSG00000207440 | RNU6-541P | RNA, U6 small nuclear 541, pseudogene | 2.7273 | 0.0000 |
| 9 | ENSG00000213731 | RAB5CP1 | RAB5C, member RAS oncogene family pseudogene 1 | 2.6010 | 0.0000 |
| 10 | ENSG00000170790 | OR10A2 | olfactory receptor family 10 subfamily A member 2 | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000282787 | novel transcript | -2.1375 | 0.0000 | |
| 63340 | ENSG00000204961 | PCDHA9 | protocadherin alpha 9 | -2.1365 | 0.0000 |
| 63339 | ENSG00000249148 | ribosomal protein L21 (RPL21) pseudogene | -2.1356 | 0.0000 | |
| 63338 | ENSG00000136108 | CKAP2 | cytoskeleton associated protein 2 | -2.1354 | 0.0000 |
| 63337 | ENSG00000165644 | COMTD1 | catechol-O-methyltransferase domain containing 1 | -2.1353 | 0.0000 |
| 63336 | ENSG00000258092 | novel transcript, antisense to FKBP4 | -2.1351 | 0.0000 | |
| 63335 | ENSG00000270036 | novel transcript | -2.1349 | 0.0000 | |
| 63334 | ENSG00000228167 | translocase of inner mitochondrial membrane 17 homolog A (yeast) (TIMM17A) pseudogene | -2.1346 | 0.0232 | |
| 63333 | ENSG00000176014 | TUBB6 | tubulin beta 6 class V | -2.1339 | 0.0000 |
| 63332 | ENSG00000234361 | novel transcript | -2.1335 | 0.0000 |
