Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773549

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773549 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M176	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000230022	FNTAP2	farnesyltransferase, CAAX box, alpha pseudogene 2	3.1699	0.0000
2	ENSG00000258930		tetratricopeptide repeat domain 7B (TTC7B) pseudogene	3.0303	0.0000
3	ENSG00000236818	ARL5AP2	ARL5A pseudogene 2	2.8937	0.0000
4	ENSG00000235612		novel transcript	2.8575	0.0000
5	ENSG00000250223	LINC01216	long intergenic non-protein coding RNA 1216	2.8074	0.0000
6	ENSG00000253383		60S ribosomal protein L36 (RPL36) pseudogene	2.8074	0.0001
7	ENSG00000236921		novel transcript	2.7974	0.0000
8	ENSG00000207440	RNU6-541P	RNA, U6 small nuclear 541, pseudogene	2.7273	0.0000
9	ENSG00000213731	RAB5CP1	RAB5C, member RAS oncogene family pseudogene 1	2.6010	0.0000
10	ENSG00000170790	OR10A2	olfactory receptor family 10 subfamily A member 2	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63127	ENSG00000232936		novel transcript	-2.0593	0.0000
63126	ENSG00000225836		novel transcript	-2.0593	0.0000
63125	ENSG00000273472		novel transcript	-2.0593	0.0000
63123	ENSG00000006625	GGCT	gamma-glutamylcyclotransferase	-2.0588	0.0000
63122	ENSG00000222987	RN7SKP68	RN7SK pseudogene 68	-2.0584	0.0000
63121	ENSG00000264483	MIR5008	microRNA 5008	-2.0581	0.0000
63120	ENSG00000125631	HTR5BP	5-hydroxytryptamine receptor 5B, pseudogene	-2.0581	0.0000
63119	ENSG00000253409	TRBV7-4	T cell receptor beta variable 7-4	-2.0580	0.0000
10	ENSG00000170790	OR10A2	olfactory receptor family 10 subfamily A member 2	2.5850	0.0000
9	ENSG00000213731	RAB5CP1	RAB5C, member RAS oncogene family pseudogene 1	2.6010	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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