SHOGoiN Cell Methylome: GSM2773549

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773549


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M176Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230022 FNTAP2 farnesyltransferase, CAAX box, alpha pseudogene 2 3.1699 0.0000
2 ENSG00000258930 tetratricopeptide repeat domain 7B (TTC7B) pseudogene 3.0303 0.0000
3 ENSG00000236818 ARL5AP2 ADP ribosylation factor like GTPase 5A pseudogene 2 2.8937 0.0000
4 ENSG00000235612 novel transcript 2.8575 0.0000
5 ENSG00000250223 LINC01216 long intergenic non-protein coding RNA 1216 2.8074 0.0000
6 ENSG00000253383 60S ribosomal protein L36 (RPL36) pseudogene 2.8074 0.0001
7 ENSG00000236921 novel transcript 2.7974 0.0000
8 ENSG00000207440 RNU6-541P RNA, U6 small nuclear 541, pseudogene 2.7273 0.0000
9 ENSG00000213731 RAB5CP1 RAB5C, member RAS oncogene family pseudogene 1 2.6010 0.0000
10 ENSG00000170790 OR10A2 olfactory receptor family 10 subfamily A member 2 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000282787 novel transcript -2.1375 0.0000
63340 ENSG00000204961 PCDHA9 protocadherin alpha 9 -2.1365 0.0000
63339 ENSG00000249148 ribosomal protein L21 (RPL21) pseudogene -2.1356 0.0000
63338 ENSG00000136108 CKAP2 cytoskeleton associated protein 2 -2.1354 0.0000
63337 ENSG00000165644 COMTD1 catechol-O-methyltransferase domain containing 1 -2.1353 0.0000
63336 ENSG00000258092 novel transcript, antisense to FKBP4 -2.1351 0.0000
63335 ENSG00000270036 novel transcript -2.1349 0.0000
63334 ENSG00000228167 translocase of inner mitochondrial membrane 17 homolog A (yeast) (TIMM17A) pseudogene -2.1346 0.0232
63333 ENSG00000176014 TUBB6 tubulin beta 6 class V -2.1339 0.0000
63332 ENSG00000234361 novel transcript -2.1335 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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