SHOGoiN Cell Methylome: GSM2773550

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773550


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M177Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258501 EIF3LP1 eukaryotic translation initiation factor 3 subunit L pseudogene 1 3.3219 0.0000
2 ENSG00000278472 novel transcript, sense intronic to AVEN 3.1699 0.0000
3 ENSG00000233040 FAM204BP family with sequence similarity 204 member B, pseudogene 3.0000 0.0000
4 ENSG00000251348 HSPD1P11 heat shock protein family D (Hsp60) member 1 pseudogene 11 3.0000 0.0000
5 ENSG00000270390 sideroflexin 4 (SFXN4) pseudogene 3.0000 0.0000
6 ENSG00000271576 novel transcript 3.0000 0.0000
7 ENSG00000232392 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2) pseudogene 2.8219 0.0000
8 ENSG00000101843 PSMD10 proteasome 26S subunit, non-ATPase 10 2.8074 0.0000
9 ENSG00000188831 DPPA3P2 developmental pluripotency associated 3 pseudogene 2 2.8074 0.0000
10 ENSG00000212259 RNU6-308P RNA, U6 small nuclear 308, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000223138 RNA5SP450 RNA, 5S ribosomal pseudogene 450 -2.3447 0.0000
63340 ENSG00000284436 MIR6869 microRNA 6869 -2.3440 0.0000
63339 ENSG00000278048 NA -2.3425 0.0000
63338 ENSG00000266560 MAGEA10-MAGEA5 readthrough -2.3421 0.0000
63337 ENSG00000124260 MAGEA10 MAGE family member A10 -2.3421 0.0000
63336 ENSG00000212327 RNU6-882P RNA, U6 small nuclear 882, pseudogene -2.3415 0.0000
63335 ENSG00000184709 LRRC26 leucine rich repeat containing 26 -2.3410 0.0000
63334 ENSG00000170542 SERPINB9 serpin family B member 9 -2.3406 0.0000
63333 ENSG00000265962 GACAT2 gastric cancer associated transcript 2 -2.3405 0.0000
63332 ENSG00000170775 GPR37 G protein-coupled receptor 37 -2.3405 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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