Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773550

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773550 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M177	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000258501	EIF3LP1	eukaryotic translation initiation factor 3 subunit L pseudogene 1	3.3219	0.0000
2	ENSG00000278472		novel transcript, sense intronic to AVEN	3.1699	0.0000
3	ENSG00000233040	FAM204BP	family with sequence similarity 204 member B, pseudogene	3.0000	0.0000
4	ENSG00000251348	HSPD1P11	heat shock protein family D (Hsp60) member 1 pseudogene 11	3.0000	0.0000
5	ENSG00000270390	SFXN4P1	SFXN4 pseudogene 1	3.0000	0.0000
6	ENSG00000271576	PRKACB-DT	PRKACB divergent transcript	3.0000	0.0000
7	ENSG00000232392	GOT2P7	GOT2 pseudogene 7	2.8219	0.0000
8	ENSG00000101843	PSMD10	proteasome 26S subunit, non-ATPase 10	2.8074	0.0000
9	ENSG00000188831	DPPA3P2	developmental pluripotency associated 3 pseudogene 2	2.8074	0.0000
10	ENSG00000212259	RNU6-308P	RNA, U6 small nuclear 308, pseudogene	2.8074	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000172366	MCRIP2	MAPK regulated corepressor interacting protein 2	-2.2914	0.0000
63127	ENSG00000162006	MSLNL	mesothelin like	-2.2914	0.0000
63126	ENSG00000125878	TCF15	transcription factor 15	-2.2911	0.0000
63125	ENSG00000207559	MIR578	microRNA 578	-2.2908	0.0000
63124	ENSG00000016402	IL20RA	interleukin 20 receptor subunit alpha	-2.2908	0.0000
63123	ENSG00000186564	FOXD2	forkhead box D2	-2.2907	0.0000
63122	ENSG00000166016	ABTB2	ankyrin repeat and BTB domain containing 2	-2.2907	0.0000
63121	ENSG00000280057		TEC	-2.2907	0.0000
63120	ENSG00000108784	NAGLU	N-acetyl-alpha-glucosaminidase	-2.2901	0.0000
63119	ENSG00000200492		Small nucleolar RNA U3	-2.2900	0.0010

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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