Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773550

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773550


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M177Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258501 EIF3LP1 eukaryotic translation initiation factor 3 subunit L pseudogene 1 3.3219 0.0000
2 ENSG00000278472 novel transcript, sense intronic to AVEN 3.1699 0.0000
3 ENSG00000233040 FAM204BP family with sequence similarity 204 member B, pseudogene 3.0000 0.0000
4 ENSG00000251348 HSPD1P11 heat shock protein family D (Hsp60) member 1 pseudogene 11 3.0000 0.0000
5 ENSG00000270390 SFXN4P1 SFXN4 pseudogene 1 3.0000 0.0000
6 ENSG00000271576 PRKACB-DT PRKACB divergent transcript 3.0000 0.0000
7 ENSG00000232392 GOT2P7 GOT2 pseudogene 7 2.8219 0.0000
8 ENSG00000101843 PSMD10 proteasome 26S subunit, non-ATPase 10 2.8074 0.0000
9 ENSG00000188831 DPPA3P2 developmental pluripotency associated 3 pseudogene 2 2.8074 0.0000
10 ENSG00000212259 RNU6-308P RNA, U6 small nuclear 308, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000172366 MCRIP2 MAPK regulated corepressor interacting protein 2 -2.2914 0.0000
63127 ENSG00000162006 MSLNL mesothelin like -2.2914 0.0000
63126 ENSG00000125878 TCF15 transcription factor 15 -2.2911 0.0000
63125 ENSG00000207559 MIR578 microRNA 578 -2.2908 0.0000
63124 ENSG00000016402 IL20RA interleukin 20 receptor subunit alpha -2.2908 0.0000
63123 ENSG00000186564 FOXD2 forkhead box D2 -2.2907 0.0000
63122 ENSG00000166016 ABTB2 ankyrin repeat and BTB domain containing 2 -2.2907 0.0000
63121 ENSG00000280057 TEC -2.2907 0.0000
63120 ENSG00000108784 NAGLU N-acetyl-alpha-glucosaminidase -2.2901 0.0000
63119 ENSG00000200492 Small nucleolar RNA U3 -2.2900 0.0010

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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