Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773550
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773550
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M177
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000258501
EIF3LP1
eukaryotic translation initiation factor 3 subunit L pseudogene 1
3.3219
0.0000
2
ENSG00000278472
novel transcript, sense intronic to AVEN
3.1699
0.0000
3
ENSG00000233040
FAM204BP
family with sequence similarity 204 member B, pseudogene
3.0000
0.0000
4
ENSG00000251348
HSPD1P11
heat shock protein family D (Hsp60) member 1 pseudogene 11
3.0000
0.0000
5
ENSG00000270390
SFXN4P1
SFXN4 pseudogene 1
3.0000
0.0000
6
ENSG00000271576
PRKACB-DT
PRKACB divergent transcript
3.0000
0.0000
7
ENSG00000232392
GOT2P7
GOT2 pseudogene 7
2.8219
0.0000
8
ENSG00000101843
PSMD10
proteasome 26S subunit, non-ATPase 10
2.8074
0.0000
9
ENSG00000188831
DPPA3P2
developmental pluripotency associated 3 pseudogene 2
2.8074
0.0000
10
ENSG00000212259
RNU6-308P
RNA, U6 small nuclear 308, pseudogene
2.8074
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000172366
MCRIP2
MAPK regulated corepressor interacting protein 2
-2.2914
0.0000
63127
ENSG00000162006
MSLNL
mesothelin like
-2.2914
0.0000
63126
ENSG00000125878
TCF15
transcription factor 15
-2.2911
0.0000
63125
ENSG00000207559
MIR578
microRNA 578
-2.2908
0.0000
63124
ENSG00000016402
IL20RA
interleukin 20 receptor subunit alpha
-2.2908
0.0000
63123
ENSG00000186564
FOXD2
forkhead box D2
-2.2907
0.0000
63122
ENSG00000166016
ABTB2
ankyrin repeat and BTB domain containing 2
-2.2907
0.0000
63121
ENSG00000280057
TEC
-2.2907
0.0000
63120
ENSG00000108784
NAGLU
N-acetyl-alpha-glucosaminidase
-2.2901
0.0000
63119
ENSG00000200492
Small nucleolar RNA U3
-2.2900
0.0010
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...