SHOGoiN Cell Methylome: GSM2773550
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773550 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M177 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000258501 | EIF3LP1 | eukaryotic translation initiation factor 3 subunit L pseudogene 1 | 3.3219 | 0.0000 |
| 2 | ENSG00000278472 | novel transcript, sense intronic to AVEN | 3.1699 | 0.0000 | |
| 3 | ENSG00000233040 | FAM204BP | family with sequence similarity 204 member B, pseudogene | 3.0000 | 0.0000 |
| 4 | ENSG00000251348 | HSPD1P11 | heat shock protein family D (Hsp60) member 1 pseudogene 11 | 3.0000 | 0.0000 |
| 5 | ENSG00000270390 | sideroflexin 4 (SFXN4) pseudogene | 3.0000 | 0.0000 | |
| 6 | ENSG00000271576 | novel transcript | 3.0000 | 0.0000 | |
| 7 | ENSG00000232392 | glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2) pseudogene | 2.8219 | 0.0000 | |
| 8 | ENSG00000101843 | PSMD10 | proteasome 26S subunit, non-ATPase 10 | 2.8074 | 0.0000 |
| 9 | ENSG00000188831 | DPPA3P2 | developmental pluripotency associated 3 pseudogene 2 | 2.8074 | 0.0000 |
| 10 | ENSG00000212259 | RNU6-308P | RNA, U6 small nuclear 308, pseudogene | 2.8074 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000223138 | RNA5SP450 | RNA, 5S ribosomal pseudogene 450 | -2.3447 | 0.0000 |
| 63340 | ENSG00000284436 | MIR6869 | microRNA 6869 | -2.3440 | 0.0000 |
| 63339 | ENSG00000278048 | NA | -2.3425 | 0.0000 | |
| 63338 | ENSG00000266560 | MAGEA10-MAGEA5 readthrough | -2.3421 | 0.0000 | |
| 63337 | ENSG00000124260 | MAGEA10 | MAGE family member A10 | -2.3421 | 0.0000 |
| 63336 | ENSG00000212327 | RNU6-882P | RNA, U6 small nuclear 882, pseudogene | -2.3415 | 0.0000 |
| 63335 | ENSG00000184709 | LRRC26 | leucine rich repeat containing 26 | -2.3410 | 0.0000 |
| 63334 | ENSG00000170542 | SERPINB9 | serpin family B member 9 | -2.3406 | 0.0000 |
| 63333 | ENSG00000265962 | GACAT2 | gastric cancer associated transcript 2 | -2.3405 | 0.0000 |
| 63332 | ENSG00000170775 | GPR37 | G protein-coupled receptor 37 | -2.3405 | 0.0000 |
