SHOGoiN Cell Methylome: GSM2773551
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773551 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M178 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000224462 | C4BPAP1 | C4BPA pseudogene 1 | 3.7004 | 0.0000 |
| 2 | ENSG00000217331 | protein phosphatase 1, catalytic subunit (PPP1C) pseudogene | 2.5850 | 0.0001 | |
| 3 | ENSG00000241406 | RN7SL515P | RNA, 7SL, cytoplasmic 515, pseudogene | 2.4286 | 0.0000 |
| 4 | ENSG00000205636 | LINC00583 | long intergenic non-protein coding RNA 583 | 2.3774 | 0.0000 |
| 5 | ENSG00000238835 | SCARNA18 | small Cajal body-specific RNA 18 | 2.3538 | 0.0000 |
| 6 | ENSG00000198967 | OR10Z1 | olfactory receptor family 10 subfamily Z member 1 | 2.3219 | 0.0000 |
| 7 | ENSG00000226750 | pseudogene similar to part of excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) (ERCC3) | 2.3219 | 0.0005 | |
| 8 | ENSG00000226883 | novel transcript | 2.3219 | 0.0005 | |
| 9 | ENSG00000238061 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog) (PSMD7) pseudogene | 2.3219 | 0.0005 | |
| 10 | ENSG00000252050 | NA | 2.3219 | 0.0005 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000173085 | COQ2 | coenzyme Q2, polyprenyltransferase | -2.3224 | 0.0000 |
| 63340 | ENSG00000262668 | olfactory receptor family 1 subfamily F member 1 | -2.3222 | 0.0000 | |
| 63339 | ENSG00000252642 | RNA5SP137 | RNA, 5S ribosomal pseudogene 137 | -2.3221 | 0.0000 |
| 63338 | ENSG00000284482 | MIR4680 | microRNA 4680 | -2.3219 | 1.0000 |
| 63337 | ENSG00000278391 | NA | -2.3219 | 0.1546 | |
| 63336 | ENSG00000273994 | SDR42E1P1 | short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1 | -2.3219 | 1.0000 |
| 63335 | ENSG00000267642 | novel transcript | -2.3219 | 1.0000 | |
| 63334 | ENSG00000250868 | XKRY | XK related, Y-linked | -2.3219 | 0.2341 |
| 63333 | ENSG00000250088 | TAF11-like protein pseudogene | -2.3219 | 0.0030 | |
| 63332 | ENSG00000234604 | ATP synthase 6 (MTATP6) pseudogene | -2.3219 | 0.6169 |
