Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773551
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773551
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M178
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000224462
C4BPAP1
C4BPA pseudogene 1
3.7004
0.0000
2
ENSG00000217331
protein phosphatase 1, catalytic subunit (PPP1C) pseudogene
2.5850
0.0001
3
ENSG00000241406
RN7SL515P
RNA, 7SL, cytoplasmic 515, pseudogene
2.4286
0.0000
4
ENSG00000205636
LINC00583
long intergenic non-protein coding RNA 583
2.3774
0.0000
5
ENSG00000238835
SCARNA18
small Cajal body-specific RNA 18
2.3538
0.0000
6
ENSG00000198967
OR10Z1
olfactory receptor family 10 subfamily Z member 1
2.3219
0.0000
7
ENSG00000226750
pseudogene similar to part of excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) (ERCC3)
2.3219
0.0005
8
ENSG00000226883
novel transcript
2.3219
0.0005
9
ENSG00000238061
proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog) (PSMD7) pseudogene
2.3219
0.0005
10
ENSG00000252050
NA
2.3219
0.0005
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000234869
novel transcript
-2.2532
0.0000
63127
ENSG00000227473
TSSK5P
testis specific serine kinase 5, pseudogene
-2.2528
0.0000
63126
ENSG00000233639
PANTR1
POU3F3 adjacent non-coding transcript 1
-2.2527
0.0000
63125
ENSG00000279068
novel transcript
-2.2526
0.0000
63124
ENSG00000252892
RNU6-548P
RNA, U6 small nuclear 548, pseudogene
-2.2525
0.0000
63123
ENSG00000130054
FAM155B
family with sequence similarity 155 member B
-2.2524
0.0000
63122
ENSG00000239215
RPL27P12
ribosomal protein L27 pseudogene 12
-2.2523
0.0000
63121
ENSG00000119335
SET
SET nuclear proto-oncogene
-2.2518
0.0000
63120
ENSG00000120324
PCDHB10
protocadherin beta 10
-2.2516
0.0000
63119
ENSG00000278532
novel transcript
-2.2507
0.0103
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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