Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773551

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773551


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M178Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224462 C4BPAP1 C4BPA pseudogene 1 3.7004 0.0000
2 ENSG00000217331 protein phosphatase 1, catalytic subunit (PPP1C) pseudogene 2.5850 0.0001
3 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.4286 0.0000
4 ENSG00000205636 LINC00583 long intergenic non-protein coding RNA 583 2.3774 0.0000
5 ENSG00000238835 SCARNA18 small Cajal body-specific RNA 18 2.3538 0.0000
6 ENSG00000198967 OR10Z1 olfactory receptor family 10 subfamily Z member 1 2.3219 0.0000
7 ENSG00000226750 pseudogene similar to part of excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) (ERCC3) 2.3219 0.0005
8 ENSG00000226883 novel transcript 2.3219 0.0005
9 ENSG00000238061 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog) (PSMD7) pseudogene 2.3219 0.0005
10 ENSG00000252050 NA 2.3219 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000234869 novel transcript -2.2532 0.0000
63127 ENSG00000227473 TSSK5P testis specific serine kinase 5, pseudogene -2.2528 0.0000
63126 ENSG00000233639 PANTR1 POU3F3 adjacent non-coding transcript 1 -2.2527 0.0000
63125 ENSG00000279068 novel transcript -2.2526 0.0000
63124 ENSG00000252892 RNU6-548P RNA, U6 small nuclear 548, pseudogene -2.2525 0.0000
63123 ENSG00000130054 FAM155B family with sequence similarity 155 member B -2.2524 0.0000
63122 ENSG00000239215 RPL27P12 ribosomal protein L27 pseudogene 12 -2.2523 0.0000
63121 ENSG00000119335 SET SET nuclear proto-oncogene -2.2518 0.0000
63120 ENSG00000120324 PCDHB10 protocadherin beta 10 -2.2516 0.0000
63119 ENSG00000278532 novel transcript -2.2507 0.0103

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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