SHOGoiN Cell Methylome: GSM2773551

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773551


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M178Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224462 C4BPAP1 C4BPA pseudogene 1 3.7004 0.0000
2 ENSG00000217331 protein phosphatase 1, catalytic subunit (PPP1C) pseudogene 2.5850 0.0001
3 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.4286 0.0000
4 ENSG00000205636 LINC00583 long intergenic non-protein coding RNA 583 2.3774 0.0000
5 ENSG00000238835 SCARNA18 small Cajal body-specific RNA 18 2.3538 0.0000
6 ENSG00000198967 OR10Z1 olfactory receptor family 10 subfamily Z member 1 2.3219 0.0000
7 ENSG00000226750 pseudogene similar to part of excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) (ERCC3) 2.3219 0.0005
8 ENSG00000226883 novel transcript 2.3219 0.0005
9 ENSG00000238061 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog) (PSMD7) pseudogene 2.3219 0.0005
10 ENSG00000252050 NA 2.3219 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000173085 COQ2 coenzyme Q2, polyprenyltransferase -2.3224 0.0000
63340 ENSG00000262668 olfactory receptor family 1 subfamily F member 1 -2.3222 0.0000
63339 ENSG00000252642 RNA5SP137 RNA, 5S ribosomal pseudogene 137 -2.3221 0.0000
63338 ENSG00000284482 MIR4680 microRNA 4680 -2.3219 1.0000
63337 ENSG00000278391 NA -2.3219 0.1546
63336 ENSG00000273994 SDR42E1P1 short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1 -2.3219 1.0000
63335 ENSG00000267642 novel transcript -2.3219 1.0000
63334 ENSG00000250868 XKRY XK related, Y-linked -2.3219 0.2341
63333 ENSG00000250088 TAF11-like protein pseudogene -2.3219 0.0030
63332 ENSG00000234604 ATP synthase 6 (MTATP6) pseudogene -2.3219 0.6169

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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