Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773551

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773551 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M178	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000224462	C4BPAP1	C4BPA pseudogene 1	3.7004	0.0000
2	ENSG00000217331		protein phosphatase 1, catalytic subunit (PPP1C) pseudogene	2.5850	0.0001
3	ENSG00000241406	RN7SL515P	RNA, 7SL, cytoplasmic 515, pseudogene	2.4286	0.0000
4	ENSG00000205636	LINC00583	long intergenic non-protein coding RNA 583	2.3774	0.0000
5	ENSG00000238835	SCARNA18	small Cajal body-specific RNA 18	2.3538	0.0000
6	ENSG00000198967	OR10Z1	olfactory receptor family 10 subfamily Z member 1	2.3219	0.0000
7	ENSG00000226750		pseudogene similar to part of excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) (ERCC3)	2.3219	0.0005
8	ENSG00000226883		novel transcript	2.3219	0.0005
9	ENSG00000238061		proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog) (PSMD7) pseudogene	2.3219	0.0005
10	ENSG00000252050		NA	2.3219	0.0005

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000234869		novel transcript	-2.2532	0.0000
63127	ENSG00000227473	TSSK5P	testis specific serine kinase 5, pseudogene	-2.2528	0.0000
63126	ENSG00000233639	PANTR1	POU3F3 adjacent non-coding transcript 1	-2.2527	0.0000
63125	ENSG00000279068		novel transcript	-2.2526	0.0000
63124	ENSG00000252892	RNU6-548P	RNA, U6 small nuclear 548, pseudogene	-2.2525	0.0000
63123	ENSG00000130054	FAM155B	family with sequence similarity 155 member B	-2.2524	0.0000
63122	ENSG00000239215	RPL27P12	ribosomal protein L27 pseudogene 12	-2.2523	0.0000
63121	ENSG00000119335	SET	SET nuclear proto-oncogene	-2.2518	0.0000
63120	ENSG00000120324	PCDHB10	protocadherin beta 10	-2.2516	0.0000
63119	ENSG00000278532		novel transcript	-2.2507	0.0103

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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