Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773552

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773552 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M179	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000083622		novel transcript, antisense to CFTR	3.5850	0.0000
2	ENSG00000225122		eukaryotic translation initiation factor 3, subunit 1 alpha, 35 kDa (EIF3S1) pseudogene	3.5850	0.0000
3	ENSG00000200151	RN7SKP231	RN7SK pseudogene 231	3.4594	0.0000
4	ENSG00000229051	LINC01788	long intergenic non-protein coding RNA 1788	3.3219	0.0000
5	ENSG00000232271		novel transcript	3.3219	0.0000
6	ENSG00000242850	RPL23AP68	ribosomal protein L23a pseudogene 68	3.3219	0.0000
7	ENSG00000256389		novel transcript	3.3219	0.0000
8	ENSG00000228042	M6PRP1	M6PR pseudogene 1	3.1699	0.0000
9	ENSG00000230039	CCNYL5	cyclin Y like 5 (pseudogene)	3.1699	0.0000
10	ENSG00000234422	UBE2WP1	ubiquitin conjugating enzyme E2 W pseudogene 1	3.1699	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000113580	NR3C1	nuclear receptor subfamily 3 group C member 1	-2.4167	0.0000
63127	ENSG00000134109	EDEM1	ER degradation enhancing alpha-mannosidase like protein 1	-2.4162	0.0000
63126	ENSG00000262434		novel transcript, antisense to RNMTL1	-2.4159	0.0000
63125	ENSG00000271880		novel transcript	-2.4157	0.0000
63124	ENSG00000265100		novel transcript, antisense to AMZ2	-2.4156	0.0000
63123	ENSG00000266560		MAGEA10-MAGEA5 readthrough	-2.4150	0.0000
63122	ENSG00000231937		novel transcript	-2.4150	0.0000
63121	ENSG00000124260	MAGEA10	MAGE family member A10	-2.4150	0.0000
63120	ENSG00000264765		novel transcript	-2.4149	0.0000
63119	ENSG00000161958	FGF11	fibroblast growth factor 11	-2.4147	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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