SHOGoiN Cell Methylome: GSM2773552
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773552 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M179 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000083622 | novel transcript, antisense to CFTR | 3.5850 | 0.0000 | |
| 2 | ENSG00000225122 | eukaryotic translation initiation factor 3, subunit 1 alpha, 35 kDa (EIF3S1) pseudogene | 3.5850 | 0.0000 | |
| 3 | ENSG00000200151 | RN7SKP231 | RN7SK pseudogene 231 | 3.4594 | 0.0000 |
| 4 | ENSG00000229051 | LINC01788 | long intergenic non-protein coding RNA 1788 | 3.3219 | 0.0000 |
| 5 | ENSG00000232271 | novel transcript | 3.3219 | 0.0000 | |
| 6 | ENSG00000242850 | RPL23AP68 | ribosomal protein L23a pseudogene 68 | 3.3219 | 0.0000 |
| 7 | ENSG00000256389 | novel transcript | 3.3219 | 0.0000 | |
| 8 | ENSG00000228042 | mannose-6-phosphate receptor (cation dependent) (M6PR) pseudogene | 3.1699 | 0.0000 | |
| 9 | ENSG00000230039 | cyclin fold protein 1 (CFP1) pseudogene | 3.1699 | 0.0000 | |
| 10 | ENSG00000234422 | UBE2WP1 | ubiquitin conjugating enzyme E2 W pseudogene 1 | 3.1699 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000276753 | MIR6821 | microRNA 6821 | -2.4897 | 0.0000 |
| 63340 | ENSG00000230910 | novel transcript | -2.4891 | 0.0000 | |
| 63339 | ENSG00000244486 | SCARF2 | scavenger receptor class F member 2 | -2.4880 | 0.0000 |
| 63338 | ENSG00000278050 | NA | -2.4877 | 0.0000 | |
| 63337 | ENSG00000258993 | centromere protein W (CENPW) pseudogene | -2.4873 | 0.0000 | |
| 63336 | ENSG00000263326 | thyroid hormone receptor interactor 11 (TRIP11) pseudogene | -2.4870 | 0.0000 | |
| 63335 | ENSG00000205861 | PCOTH | Pro-X-Gly collagen triple helix like repeat containing | -2.4865 | 0.0000 |
| 63334 | ENSG00000232024 | LSM12P1 | LSM12 pseudogene 1 | -2.4847 | 0.0000 |
| 63333 | ENSG00000130700 | GATA5 | GATA binding protein 5 | -2.4846 | 0.0000 |
| 63332 | ENSG00000167800 | TBX10 | T-box 10 | -2.4839 | 0.0000 |
