SHOGoiN Cell Methylome: GSM2773552

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773552


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M179Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000083622 novel transcript, antisense to CFTR 3.5850 0.0000
2 ENSG00000225122 eukaryotic translation initiation factor 3, subunit 1 alpha, 35 kDa (EIF3S1) pseudogene 3.5850 0.0000
3 ENSG00000200151 RN7SKP231 RN7SK pseudogene 231 3.4594 0.0000
4 ENSG00000229051 LINC01788 long intergenic non-protein coding RNA 1788 3.3219 0.0000
5 ENSG00000232271 novel transcript 3.3219 0.0000
6 ENSG00000242850 RPL23AP68 ribosomal protein L23a pseudogene 68 3.3219 0.0000
7 ENSG00000256389 novel transcript 3.3219 0.0000
8 ENSG00000228042 mannose-6-phosphate receptor (cation dependent) (M6PR) pseudogene 3.1699 0.0000
9 ENSG00000230039 cyclin fold protein 1 (CFP1) pseudogene 3.1699 0.0000
10 ENSG00000234422 UBE2WP1 ubiquitin conjugating enzyme E2 W pseudogene 1 3.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000276753 MIR6821 microRNA 6821 -2.4897 0.0000
63340 ENSG00000230910 novel transcript -2.4891 0.0000
63339 ENSG00000244486 SCARF2 scavenger receptor class F member 2 -2.4880 0.0000
63338 ENSG00000278050 NA -2.4877 0.0000
63337 ENSG00000258993 centromere protein W (CENPW) pseudogene -2.4873 0.0000
63336 ENSG00000263326 thyroid hormone receptor interactor 11 (TRIP11) pseudogene -2.4870 0.0000
63335 ENSG00000205861 PCOTH Pro-X-Gly collagen triple helix like repeat containing -2.4865 0.0000
63334 ENSG00000232024 LSM12P1 LSM12 pseudogene 1 -2.4847 0.0000
63333 ENSG00000130700 GATA5 GATA binding protein 5 -2.4846 0.0000
63332 ENSG00000167800 TBX10 T-box 10 -2.4839 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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