Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773552

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773552


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M179Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000083622 novel transcript, antisense to CFTR 3.5850 0.0000
2 ENSG00000225122 eukaryotic translation initiation factor 3, subunit 1 alpha, 35 kDa (EIF3S1) pseudogene 3.5850 0.0000
3 ENSG00000200151 RN7SKP231 RN7SK pseudogene 231 3.4594 0.0000
4 ENSG00000229051 LINC01788 long intergenic non-protein coding RNA 1788 3.3219 0.0000
5 ENSG00000232271 novel transcript 3.3219 0.0000
6 ENSG00000242850 RPL23AP68 ribosomal protein L23a pseudogene 68 3.3219 0.0000
7 ENSG00000256389 novel transcript 3.3219 0.0000
8 ENSG00000228042 M6PRP1 M6PR pseudogene 1 3.1699 0.0000
9 ENSG00000230039 CCNYL5 cyclin Y like 5 (pseudogene) 3.1699 0.0000
10 ENSG00000234422 UBE2WP1 ubiquitin conjugating enzyme E2 W pseudogene 1 3.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000113580 NR3C1 nuclear receptor subfamily 3 group C member 1 -2.4167 0.0000
63127 ENSG00000134109 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 -2.4162 0.0000
63126 ENSG00000262434 novel transcript, antisense to RNMTL1 -2.4159 0.0000
63125 ENSG00000271880 novel transcript -2.4157 0.0000
63124 ENSG00000265100 novel transcript, antisense to AMZ2 -2.4156 0.0000
63123 ENSG00000266560 MAGEA10-MAGEA5 readthrough -2.4150 0.0000
63122 ENSG00000231937 novel transcript -2.4150 0.0000
63121 ENSG00000124260 MAGEA10 MAGE family member A10 -2.4150 0.0000
63120 ENSG00000264765 novel transcript -2.4149 0.0000
63119 ENSG00000161958 FGF11 fibroblast growth factor 11 -2.4147 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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