Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773552
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773552
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M179
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000083622
novel transcript, antisense to CFTR
3.5850
0.0000
2
ENSG00000225122
eukaryotic translation initiation factor 3, subunit 1 alpha, 35 kDa (EIF3S1) pseudogene
3.5850
0.0000
3
ENSG00000200151
RN7SKP231
RN7SK pseudogene 231
3.4594
0.0000
4
ENSG00000229051
LINC01788
long intergenic non-protein coding RNA 1788
3.3219
0.0000
5
ENSG00000232271
novel transcript
3.3219
0.0000
6
ENSG00000242850
RPL23AP68
ribosomal protein L23a pseudogene 68
3.3219
0.0000
7
ENSG00000256389
novel transcript
3.3219
0.0000
8
ENSG00000228042
M6PRP1
M6PR pseudogene 1
3.1699
0.0000
9
ENSG00000230039
CCNYL5
cyclin Y like 5 (pseudogene)
3.1699
0.0000
10
ENSG00000234422
UBE2WP1
ubiquitin conjugating enzyme E2 W pseudogene 1
3.1699
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000113580
NR3C1
nuclear receptor subfamily 3 group C member 1
-2.4167
0.0000
63127
ENSG00000134109
EDEM1
ER degradation enhancing alpha-mannosidase like protein 1
-2.4162
0.0000
63126
ENSG00000262434
novel transcript, antisense to RNMTL1
-2.4159
0.0000
63125
ENSG00000271880
novel transcript
-2.4157
0.0000
63124
ENSG00000265100
novel transcript, antisense to AMZ2
-2.4156
0.0000
63123
ENSG00000266560
MAGEA10-MAGEA5 readthrough
-2.4150
0.0000
63122
ENSG00000231937
novel transcript
-2.4150
0.0000
63121
ENSG00000124260
MAGEA10
MAGE family member A10
-2.4150
0.0000
63120
ENSG00000264765
novel transcript
-2.4149
0.0000
63119
ENSG00000161958
FGF11
fibroblast growth factor 11
-2.4147
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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