Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773553

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773553


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M180Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249994 novel transcript 3.0000 0.0000
2 ENSG00000242021 novel transcript 2.9769 0.0000
3 ENSG00000201423 RN7SKP246 RN7SK pseudogene 246 2.8873 0.0000
4 ENSG00000223152 RNU4-88P RNA, U4 small nuclear 88, pseudogene 2.8774 0.0000
5 ENSG00000175143 OR2T1 olfactory receptor family 2 subfamily T member 1 2.8074 0.0000
6 ENSG00000185903 OR11N1P olfactory receptor family 11 subfamily N member 1 pseudogene 2.8074 0.0000
7 ENSG00000221782 MIR548F2 microRNA 548f-2 2.8074 0.0000
8 ENSG00000242246 mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene 2.8074 0.0000
9 ENSG00000265328 MIR548AB microRNA 548ab 2.8074 0.0000
10 ENSG00000270611 eukaryotic translation elongation factor 1 alpha 1, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000229508 PHKG1P4 phosphorylase kinase catalytic subunit gamma 1 pseudogene 4 -2.3652 0.0000
63127 ENSG00000133703 KRAS KRAS proto-oncogene, GTPase -2.3652 0.0000
63126 ENSG00000116514 RNF19B ring finger protein 19B -2.3643 0.0000
63125 ENSG00000151694 ADAM17 ADAM metallopeptidase domain 17 -2.3642 0.0000
63124 ENSG00000228672 PROB1 proline rich basic protein 1 -2.3642 0.0000
63123 ENSG00000066735 KIF26A kinesin family member 26A -2.3642 0.0000
63122 ENSG00000274213 novel transcript -2.3639 0.0000
63121 ENSG00000175215 CTDSP2 CTD small phosphatase 2 -2.3636 0.0000
63120 ENSG00000274507 novel transcript, antisense to PYGB -2.3629 0.0000
63119 ENSG00000174358 SLC6A19 solute carrier family 6 member 19 -2.3627 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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