Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773553

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773553 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M180	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000249994		novel transcript	3.0000	0.0000
2	ENSG00000242021		novel transcript	2.9769	0.0000
3	ENSG00000201423	RN7SKP246	RN7SK pseudogene 246	2.8873	0.0000
4	ENSG00000223152	RNU4-88P	RNA, U4 small nuclear 88, pseudogene	2.8774	0.0000
5	ENSG00000175143	OR2T1	olfactory receptor family 2 subfamily T member 1	2.8074	0.0000
6	ENSG00000185903	OR11N1P	olfactory receptor family 11 subfamily N member 1 pseudogene	2.8074	0.0000
7	ENSG00000221782	MIR548F2	microRNA 548f-2	2.8074	0.0000
8	ENSG00000242246		mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene	2.8074	0.0000
9	ENSG00000265328	MIR548AB	microRNA 548ab	2.8074	0.0000
10	ENSG00000270611		eukaryotic translation elongation factor 1 alpha 1, pseudogene	2.8074	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000229508	PHKG1P4	phosphorylase kinase catalytic subunit gamma 1 pseudogene 4	-2.3652	0.0000
63127	ENSG00000133703	KRAS	KRAS proto-oncogene, GTPase	-2.3652	0.0000
63126	ENSG00000116514	RNF19B	ring finger protein 19B	-2.3643	0.0000
63125	ENSG00000151694	ADAM17	ADAM metallopeptidase domain 17	-2.3642	0.0000
63124	ENSG00000228672	PROB1	proline rich basic protein 1	-2.3642	0.0000
63123	ENSG00000066735	KIF26A	kinesin family member 26A	-2.3642	0.0000
63122	ENSG00000274213		novel transcript	-2.3639	0.0000
63121	ENSG00000175215	CTDSP2	CTD small phosphatase 2	-2.3636	0.0000
63120	ENSG00000274507		novel transcript, antisense to PYGB	-2.3629	0.0000
63119	ENSG00000174358	SLC6A19	solute carrier family 6 member 19	-2.3627	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...