Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773553
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773553
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M180
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000249994
novel transcript
3.0000
0.0000
2
ENSG00000242021
novel transcript
2.9769
0.0000
3
ENSG00000201423
RN7SKP246
RN7SK pseudogene 246
2.8873
0.0000
4
ENSG00000223152
RNU4-88P
RNA, U4 small nuclear 88, pseudogene
2.8774
0.0000
5
ENSG00000175143
OR2T1
olfactory receptor family 2 subfamily T member 1
2.8074
0.0000
6
ENSG00000185903
OR11N1P
olfactory receptor family 11 subfamily N member 1 pseudogene
2.8074
0.0000
7
ENSG00000221782
MIR548F2
microRNA 548f-2
2.8074
0.0000
8
ENSG00000242246
mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene
2.8074
0.0000
9
ENSG00000265328
MIR548AB
microRNA 548ab
2.8074
0.0000
10
ENSG00000270611
eukaryotic translation elongation factor 1 alpha 1, pseudogene
2.8074
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000229508
PHKG1P4
phosphorylase kinase catalytic subunit gamma 1 pseudogene 4
-2.3652
0.0000
63127
ENSG00000133703
KRAS
KRAS proto-oncogene, GTPase
-2.3652
0.0000
63126
ENSG00000116514
RNF19B
ring finger protein 19B
-2.3643
0.0000
63125
ENSG00000151694
ADAM17
ADAM metallopeptidase domain 17
-2.3642
0.0000
63124
ENSG00000228672
PROB1
proline rich basic protein 1
-2.3642
0.0000
63123
ENSG00000066735
KIF26A
kinesin family member 26A
-2.3642
0.0000
63122
ENSG00000274213
novel transcript
-2.3639
0.0000
63121
ENSG00000175215
CTDSP2
CTD small phosphatase 2
-2.3636
0.0000
63120
ENSG00000274507
novel transcript, antisense to PYGB
-2.3629
0.0000
63119
ENSG00000174358
SLC6A19
solute carrier family 6 member 19
-2.3627
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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