Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773554
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773554
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M181
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000270976
ubiquitin C (UBC) pseudogene
3.0222
0.0000
2
ENSG00000222042
novel transcript
3.0000
0.0000
3
ENSG00000254677
OSBPL9P2
oxysterol binding protein like 9 pseudogene 2
2.8074
0.0000
4
ENSG00000255070
OSBPL9P3
oxysterol binding protein like 9 pseudogene 3
2.8074
0.0000
5
ENSG00000147003
CLTRN
collectrin, amino acid transport regulator
2.6025
0.0000
6
ENSG00000198416
ZNF658B
zinc finger protein 658B (pseudogene)
2.5850
0.0002
7
ENSG00000248191
PES1P1
pescadillo ribosomal biogenesis factor 1 pseudogene 1
2.5850
0.0002
8
ENSG00000227694
RPL23AP74
ribosomal protein L23a pseudogene 74
2.4818
0.0000
9
ENSG00000267207
novel transcript, antisense to BCAS3
2.4818
0.0000
10
ENSG00000267449
novel transcript, antisense to BCAS3
2.4818
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000135454
B4GALNT1
beta-1,4-N-acetyl-galactosaminyltransferase 1
-2.1205
0.0000
63127
ENSG00000200786
RNA5SP234
RNA, 5S ribosomal pseudogene 234
-2.1205
0.0012
63126
ENSG00000280057
TEC
-2.1205
0.0000
63125
ENSG00000106689
LHX2
LIM homeobox 2
-2.1205
0.0000
63124
ENSG00000125812
GZF1
GDNF inducible zinc finger protein 1
-2.1201
0.0000
63123
ENSG00000155367
PPM1J
protein phosphatase, Mg2+/Mn2+ dependent 1J
-2.1199
0.0000
63122
ENSG00000198146
ZNF770
zinc finger protein 770
-2.1191
0.0000
63121
ENSG00000113196
HAND1
heart and neural crest derivatives expressed 1
-2.1190
0.0000
63120
ENSG00000147596
PRDM14
PR/SET domain 14
-2.1183
0.0000
63119
ENSG00000275540
ubiquitin specific peptidase 6 (Tre-2 oncogene) (USP6) pseudogene
-2.1181
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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