SHOGoiN Cell Methylome: GSM2773554
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773554 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M181 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000270976 | ubiquitin C (UBC) pseudogene | 3.0222 | 0.0000 | |
| 2 | ENSG00000222042 | novel transcript | 3.0000 | 0.0000 | |
| 3 | ENSG00000254677 | OSBPL9P2 | oxysterol binding protein like 9 pseudogene 2 | 2.8074 | 0.0000 |
| 4 | ENSG00000255070 | OSBPL9P3 | oxysterol binding protein like 9 pseudogene 3 | 2.8074 | 0.0000 |
| 5 | ENSG00000147003 | CLTRN | collectrin, amino acid transport regulator | 2.6025 | 0.0000 |
| 6 | ENSG00000198416 | ZNF658B | zinc finger protein 658B (pseudogene) | 2.5850 | 0.0002 |
| 7 | ENSG00000248191 | PES1P1 | pescadillo ribosomal biogenesis factor 1 pseudogene 1 | 2.5850 | 0.0002 |
| 8 | ENSG00000227694 | RPL23AP74 | ribosomal protein L23a pseudogene 74 | 2.4818 | 0.0000 |
| 9 | ENSG00000267207 | novel transcript, antisense to BCAS3 | 2.4818 | 0.0000 | |
| 10 | ENSG00000267449 | novel transcript, antisense to BCAS3 | 2.4818 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000245105 | A2M-AS1 | A2M antisense RNA 1 | -2.1899 | 0.0000 |
| 63340 | ENSG00000221081 | MIR320D2 | microRNA 320d-2 | -2.1887 | 0.0023 |
| 63339 | ENSG00000162981 | LRATD1 | LRAT domain containing 1 | -2.1886 | 0.0000 |
| 63338 | ENSG00000226124 | FTCDNL1 | formiminotransferase cyclodeaminase N-terminal like | -2.1884 | 0.0000 |
| 63337 | ENSG00000129465 | RIPK3 | receptor interacting serine/threonine kinase 3 | -2.1879 | 0.0000 |
| 63336 | ENSG00000284284 | MIR4712 | microRNA 4712 | -2.1870 | 0.0000 |
| 63335 | ENSG00000259715 | novel transcript | -2.1870 | 0.0000 | |
| 63334 | ENSG00000259368 | novel transcript, antisense to DISP2 | -2.1864 | 0.0000 | |
| 63333 | ENSG00000260159 | family with sequence similarity 108, member A1 (FAM108A1) pseudogene | -2.1860 | 0.0000 | |
| 63332 | ENSG00000201184 | RNU4-68P | RNA, U4 small nuclear 68, pseudogene | -2.1854 | 0.0000 |
