Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773554

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773554 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M181	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000270976		ubiquitin C (UBC) pseudogene	3.0222	0.0000
2	ENSG00000222042		novel transcript	3.0000	0.0000
3	ENSG00000254677	OSBPL9P2	oxysterol binding protein like 9 pseudogene 2	2.8074	0.0000
4	ENSG00000255070	OSBPL9P3	oxysterol binding protein like 9 pseudogene 3	2.8074	0.0000
5	ENSG00000147003	CLTRN	collectrin, amino acid transport regulator	2.6025	0.0000
6	ENSG00000198416	ZNF658B	zinc finger protein 658B (pseudogene)	2.5850	0.0002
7	ENSG00000248191	PES1P1	pescadillo ribosomal biogenesis factor 1 pseudogene 1	2.5850	0.0002
8	ENSG00000227694	RPL23AP74	ribosomal protein L23a pseudogene 74	2.4818	0.0000
9	ENSG00000267207		novel transcript, antisense to BCAS3	2.4818	0.0000
10	ENSG00000267449		novel transcript, antisense to BCAS3	2.4818	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000135454	B4GALNT1	beta-1,4-N-acetyl-galactosaminyltransferase 1	-2.1205	0.0000
63127	ENSG00000200786	RNA5SP234	RNA, 5S ribosomal pseudogene 234	-2.1205	0.0012
63126	ENSG00000280057		TEC	-2.1205	0.0000
63125	ENSG00000106689	LHX2	LIM homeobox 2	-2.1205	0.0000
63124	ENSG00000125812	GZF1	GDNF inducible zinc finger protein 1	-2.1201	0.0000
63123	ENSG00000155367	PPM1J	protein phosphatase, Mg2+/Mn2+ dependent 1J	-2.1199	0.0000
63122	ENSG00000198146	ZNF770	zinc finger protein 770	-2.1191	0.0000
63121	ENSG00000113196	HAND1	heart and neural crest derivatives expressed 1	-2.1190	0.0000
63120	ENSG00000147596	PRDM14	PR/SET domain 14	-2.1183	0.0000
63119	ENSG00000275540		ubiquitin specific peptidase 6 (Tre-2 oncogene) (USP6) pseudogene	-2.1181	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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