Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773554

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773554


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M181Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000270976 ubiquitin C (UBC) pseudogene 3.0222 0.0000
2 ENSG00000222042 novel transcript 3.0000 0.0000
3 ENSG00000254677 OSBPL9P2 oxysterol binding protein like 9 pseudogene 2 2.8074 0.0000
4 ENSG00000255070 OSBPL9P3 oxysterol binding protein like 9 pseudogene 3 2.8074 0.0000
5 ENSG00000147003 CLTRN collectrin, amino acid transport regulator 2.6025 0.0000
6 ENSG00000198416 ZNF658B zinc finger protein 658B (pseudogene) 2.5850 0.0002
7 ENSG00000248191 PES1P1 pescadillo ribosomal biogenesis factor 1 pseudogene 1 2.5850 0.0002
8 ENSG00000227694 RPL23AP74 ribosomal protein L23a pseudogene 74 2.4818 0.0000
9 ENSG00000267207 novel transcript, antisense to BCAS3 2.4818 0.0000
10 ENSG00000267449 novel transcript, antisense to BCAS3 2.4818 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000135454 B4GALNT1 beta-1,4-N-acetyl-galactosaminyltransferase 1 -2.1205 0.0000
63127 ENSG00000200786 RNA5SP234 RNA, 5S ribosomal pseudogene 234 -2.1205 0.0012
63126 ENSG00000280057 TEC -2.1205 0.0000
63125 ENSG00000106689 LHX2 LIM homeobox 2 -2.1205 0.0000
63124 ENSG00000125812 GZF1 GDNF inducible zinc finger protein 1 -2.1201 0.0000
63123 ENSG00000155367 PPM1J protein phosphatase, Mg2+/Mn2+ dependent 1J -2.1199 0.0000
63122 ENSG00000198146 ZNF770 zinc finger protein 770 -2.1191 0.0000
63121 ENSG00000113196 HAND1 heart and neural crest derivatives expressed 1 -2.1190 0.0000
63120 ENSG00000147596 PRDM14 PR/SET domain 14 -2.1183 0.0000
63119 ENSG00000275540 ubiquitin specific peptidase 6 (Tre-2 oncogene) (USP6) pseudogene -2.1181 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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