SHOGoiN Cell Methylome: GSM2773555
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773555 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M182 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000226254 | PTP4A1P3 | PTP4A1 pseudogene 3 | 3.0000 | 0.0000 |
| 2 | ENSG00000255548 | novel transcript | 2.8074 | 0.0000 | |
| 3 | ENSG00000218187 | transducin (beta)-like 1 X-linked receptor 1 (TBL1XR1) pseudogene | 2.6962 | 0.0000 | |
| 4 | ENSG00000182000 | PPIAP73 | peptidylprolyl isomerase A pseudogene 73 | 2.5850 | 0.0000 |
| 5 | ENSG00000228217 | PNRC2P1 | proline rich nuclear receptor coactivator 2 pseudogene 1 | 2.5850 | 0.0000 |
| 6 | ENSG00000230081 | HSPE1P28 | heat shock protein family E (Hsp10) member 1 pseudogene 28 | 2.5850 | 0.0001 |
| 7 | ENSG00000251838 | NA | 2.5850 | 0.0001 | |
| 8 | ENSG00000252115 | NA | 2.5850 | 0.0000 | |
| 9 | ENSG00000267585 | ribosomal protein L10a (RPL10A) pseudogene | 2.5499 | 0.0000 | |
| 10 | ENSG00000225369 | capping protein (actin filament) muscle Z-line, alpha 1 (CAPZA1) pseudogene | 2.5265 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000267729 | novel transcript, antisense to TLCD1 | -2.3922 | 0.0000 | |
| 63340 | ENSG00000226411 | phosphorylase kinase, gamma 1 (muscle) (PHKG1) pseudogene | -2.3919 | 0.0000 | |
| 63339 | ENSG00000235016 | SEMA3F-AS1 | SEMA3F antisense RNA 1 | -2.3917 | 0.0000 |
| 63338 | ENSG00000054148 | PHPT1 | phosphohistidine phosphatase 1 | -2.3908 | 0.0000 |
| 63337 | ENSG00000028116 | VRK2 | VRK serine/threonine kinase 2 | -2.3898 | 0.0000 |
| 63336 | ENSG00000259214 | ankyrin repeat domain 18B (ANKRD18B) pseudogene | -2.3889 | 0.0003 | |
| 63335 | ENSG00000185668 | POU3F1 | POU class 3 homeobox 1 | -2.3887 | 0.0000 |
| 63334 | ENSG00000198780 | FAM169A | family with sequence similarity 169 member A | -2.3885 | 0.0000 |
| 63333 | ENSG00000100836 | PABPN1 | poly(A) binding protein nuclear 1 | -2.3881 | 0.0000 |
| 63332 | ENSG00000284188 | novel protein | -2.3881 | 0.0000 |
