Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773555

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773555 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M182	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000226254	PTP4A1P3	PTP4A1 pseudogene 3	3.0000	0.0000
2	ENSG00000255548		novel transcript	2.8074	0.0000
3	ENSG00000218187		transducin (beta)-like 1 X-linked receptor 1 (TBL1XR1) pseudogene	2.6962	0.0000
4	ENSG00000182000	PPIAP73	peptidylprolyl isomerase A pseudogene 73	2.5850	0.0000
5	ENSG00000228217	PNRC2P1	proline rich nuclear receptor coactivator 2 pseudogene 1	2.5850	0.0000
6	ENSG00000230081	HSPE1P28	heat shock protein family E (Hsp10) member 1 pseudogene 28	2.5850	0.0001
7	ENSG00000251838		NA	2.5850	0.0001
8	ENSG00000252115		Y RNA	2.5850	0.0000
9	ENSG00000267585		ribosomal protein L10a (RPL10A) pseudogene	2.5499	0.0000
10	ENSG00000225369	CAPZA1P2	CAPZA1 pseudogene 2	2.5265	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000181754	AMIGO1	adhesion molecule with Ig like domain 1	-2.3186	0.0000
63127	ENSG00000119042	SATB2	SATB homeobox 2	-2.3185	0.0000
63126	ENSG00000250522		novel transcript	-2.3184	0.0066
63125	ENSG00000117394	SLC2A1	solute carrier family 2 member 1	-2.3181	0.0000
63124	ENSG00000136826	KLF4	Kruppel like factor 4	-2.3180	0.0000
63123	ENSG00000214915		novel transcript	-2.3177	0.0000
63122	ENSG00000222987	RN7SKP68	RN7SK pseudogene 68	-2.3176	0.0000
63121	ENSG00000265194		novel transcript, antisense MTAP	-2.3170	0.0021
63120	ENSG00000237087		novel transcript	-2.3170	0.0000
63119	ENSG00000263107		solute carrier family 47, member 1 (SLC47A1) pseudogene	-2.3167	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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