Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773555
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773555
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M182
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000226254
PTP4A1P3
PTP4A1 pseudogene 3
3.0000
0.0000
2
ENSG00000255548
novel transcript
2.8074
0.0000
3
ENSG00000218187
transducin (beta)-like 1 X-linked receptor 1 (TBL1XR1) pseudogene
2.6962
0.0000
4
ENSG00000182000
PPIAP73
peptidylprolyl isomerase A pseudogene 73
2.5850
0.0000
5
ENSG00000228217
PNRC2P1
proline rich nuclear receptor coactivator 2 pseudogene 1
2.5850
0.0000
6
ENSG00000230081
HSPE1P28
heat shock protein family E (Hsp10) member 1 pseudogene 28
2.5850
0.0001
7
ENSG00000251838
NA
2.5850
0.0001
8
ENSG00000252115
Y RNA
2.5850
0.0000
9
ENSG00000267585
ribosomal protein L10a (RPL10A) pseudogene
2.5499
0.0000
10
ENSG00000225369
CAPZA1P2
CAPZA1 pseudogene 2
2.5265
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000181754
AMIGO1
adhesion molecule with Ig like domain 1
-2.3186
0.0000
63127
ENSG00000119042
SATB2
SATB homeobox 2
-2.3185
0.0000
63126
ENSG00000250522
novel transcript
-2.3184
0.0066
63125
ENSG00000117394
SLC2A1
solute carrier family 2 member 1
-2.3181
0.0000
63124
ENSG00000136826
KLF4
Kruppel like factor 4
-2.3180
0.0000
63123
ENSG00000214915
novel transcript
-2.3177
0.0000
63122
ENSG00000222987
RN7SKP68
RN7SK pseudogene 68
-2.3176
0.0000
63121
ENSG00000265194
novel transcript, antisense MTAP
-2.3170
0.0021
63120
ENSG00000237087
novel transcript
-2.3170
0.0000
63119
ENSG00000263107
solute carrier family 47, member 1 (SLC47A1) pseudogene
-2.3167
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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