Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773555

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773555


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M182Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226254 PTP4A1P3 PTP4A1 pseudogene 3 3.0000 0.0000
2 ENSG00000255548 novel transcript 2.8074 0.0000
3 ENSG00000218187 transducin (beta)-like 1 X-linked receptor 1 (TBL1XR1) pseudogene 2.6962 0.0000
4 ENSG00000182000 PPIAP73 peptidylprolyl isomerase A pseudogene 73 2.5850 0.0000
5 ENSG00000228217 PNRC2P1 proline rich nuclear receptor coactivator 2 pseudogene 1 2.5850 0.0000
6 ENSG00000230081 HSPE1P28 heat shock protein family E (Hsp10) member 1 pseudogene 28 2.5850 0.0001
7 ENSG00000251838 NA 2.5850 0.0001
8 ENSG00000252115 Y RNA 2.5850 0.0000
9 ENSG00000267585 ribosomal protein L10a (RPL10A) pseudogene 2.5499 0.0000
10 ENSG00000225369 CAPZA1P2 CAPZA1 pseudogene 2 2.5265 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000181754 AMIGO1 adhesion molecule with Ig like domain 1 -2.3186 0.0000
63127 ENSG00000119042 SATB2 SATB homeobox 2 -2.3185 0.0000
63126 ENSG00000250522 novel transcript -2.3184 0.0066
63125 ENSG00000117394 SLC2A1 solute carrier family 2 member 1 -2.3181 0.0000
63124 ENSG00000136826 KLF4 Kruppel like factor 4 -2.3180 0.0000
63123 ENSG00000214915 novel transcript -2.3177 0.0000
63122 ENSG00000222987 RN7SKP68 RN7SK pseudogene 68 -2.3176 0.0000
63121 ENSG00000265194 novel transcript, antisense MTAP -2.3170 0.0021
63120 ENSG00000237087 novel transcript -2.3170 0.0000
63119 ENSG00000263107 solute carrier family 47, member 1 (SLC47A1) pseudogene -2.3167 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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