SHOGoiN Cell Methylome: GSM2773555

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773555


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M182Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226254 PTP4A1P3 PTP4A1 pseudogene 3 3.0000 0.0000
2 ENSG00000255548 novel transcript 2.8074 0.0000
3 ENSG00000218187 transducin (beta)-like 1 X-linked receptor 1 (TBL1XR1) pseudogene 2.6962 0.0000
4 ENSG00000182000 PPIAP73 peptidylprolyl isomerase A pseudogene 73 2.5850 0.0000
5 ENSG00000228217 PNRC2P1 proline rich nuclear receptor coactivator 2 pseudogene 1 2.5850 0.0000
6 ENSG00000230081 HSPE1P28 heat shock protein family E (Hsp10) member 1 pseudogene 28 2.5850 0.0001
7 ENSG00000251838 NA 2.5850 0.0001
8 ENSG00000252115 NA 2.5850 0.0000
9 ENSG00000267585 ribosomal protein L10a (RPL10A) pseudogene 2.5499 0.0000
10 ENSG00000225369 capping protein (actin filament) muscle Z-line, alpha 1 (CAPZA1) pseudogene 2.5265 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000267729 novel transcript, antisense to TLCD1 -2.3922 0.0000
63340 ENSG00000226411 phosphorylase kinase, gamma 1 (muscle) (PHKG1) pseudogene -2.3919 0.0000
63339 ENSG00000235016 SEMA3F-AS1 SEMA3F antisense RNA 1 -2.3917 0.0000
63338 ENSG00000054148 PHPT1 phosphohistidine phosphatase 1 -2.3908 0.0000
63337 ENSG00000028116 VRK2 VRK serine/threonine kinase 2 -2.3898 0.0000
63336 ENSG00000259214 ankyrin repeat domain 18B (ANKRD18B) pseudogene -2.3889 0.0003
63335 ENSG00000185668 POU3F1 POU class 3 homeobox 1 -2.3887 0.0000
63334 ENSG00000198780 FAM169A family with sequence similarity 169 member A -2.3885 0.0000
63333 ENSG00000100836 PABPN1 poly(A) binding protein nuclear 1 -2.3881 0.0000
63332 ENSG00000284188 novel protein -2.3881 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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