SHOGoiN Cell Methylome: GSM2773556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773556


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M183Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224326 novel transcript 3.5850 0.0000
2 ENSG00000201567 RNA5SP510 RNA, 5S ribosomal pseudogene 510 2.8074 0.0000
3 ENSG00000254564 retinitis pigmentosa GTPase regulator (RPGR) pseudogene 2.8074 0.0000
4 ENSG00000173862 novel transcript 2.7560 0.0000
5 ENSG00000265315 RN7SL199P RNA, 7SL, cytoplasmic 199, pseudogene 2.6302 0.0000
6 ENSG00000237767 LINC01370 long intergenic non-protein coding RNA 1370 2.5850 0.0000
7 ENSG00000251838 NA 2.5850 0.0002
8 ENSG00000262119 novel transcript, sense intronic to NOVA1 2.5850 0.0000
9 ENSG00000278757 NA 2.4554 0.0000
10 ENSG00000258416 novel transcript 2.3962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000181619 GPR135 G protein-coupled receptor 135 -2.1724 0.0000
63340 ENSG00000135116 HRK harakiri, BCL2 interacting protein -2.1723 0.0000
63339 ENSG00000189127 ANKRD34B ankyrin repeat domain 34B -2.1713 0.0000
63338 ENSG00000184083 FAM120C family with sequence similarity 120C -2.1713 0.0000
63337 ENSG00000174448 STARD6 StAR related lipid transfer domain containing 6 -2.1709 0.0000
63336 ENSG00000265094 novel transcript -2.1706 0.0000
63335 ENSG00000134438 RAX retina and anterior neural fold homeobox -2.1704 0.0000
63334 ENSG00000158050 DUSP2 dual specificity phosphatase 2 -2.1703 0.0000
63333 ENSG00000224136 splicing factor, arginine/serine-rich 3 (SFRS3) pseudogene -2.1692 0.0000
63332 ENSG00000273820 USP27X ubiquitin specific peptidase 27 X-linked -2.1687 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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