Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773556
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773556
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M183
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000224326
novel transcript
3.5850
0.0000
2
ENSG00000201567
RNA5SP510
RNA, 5S ribosomal pseudogene 510
2.8074
0.0000
3
ENSG00000254564
retinitis pigmentosa GTPase regulator (RPGR) pseudogene
2.8074
0.0000
4
ENSG00000173862
novel transcript
2.7560
0.0000
5
ENSG00000265315
RN7SL199P
RNA, 7SL, cytoplasmic 199, pseudogene
2.6302
0.0000
6
ENSG00000237767
LINC01370
long intergenic non-protein coding RNA 1370
2.5850
0.0000
7
ENSG00000251838
NA
2.5850
0.0002
8
ENSG00000262119
novel transcript, sense intronic to NOVA1
2.5850
0.0000
9
ENSG00000278757
U6 spliceosomal RNA
2.4554
0.0000
10
ENSG00000258416
novel transcript
2.3962
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000251555
novel transcript
-2.0882
0.0000
63127
ENSG00000155330
C16orf87
chromosome 16 open reading frame 87
-2.0879
0.0000
63126
ENSG00000129911
KLF16
Kruppel like factor 16
-2.0874
0.0000
63124
ENSG00000124205
EDN3
endothelin 3
-2.0868
0.0000
63123
ENSG00000154734
ADAMTS1
ADAM metallopeptidase with thrombospondin type 1 motif 1
-2.0867
0.0000
63122
ENSG00000102878
HSF4
heat shock transcription factor 4
-2.0866
0.0000
63121
ENSG00000278631
SOWAHCP5
SOWAHC pseudogene 5
-2.0865
0.0000
63120
ENSG00000282564
novel transcript
-2.0857
0.0000
63119
ENSG00000255560
OR4R2P
olfactory receptor family 4 subfamily R member 2 pseudogene
-2.0850
0.3618
10
ENSG00000258416
novel transcript
2.3962
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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