SHOGoiN Cell Methylome: GSM2773556
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773556 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M183 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000224326 | novel transcript | 3.5850 | 0.0000 | |
| 2 | ENSG00000201567 | RNA5SP510 | RNA, 5S ribosomal pseudogene 510 | 2.8074 | 0.0000 |
| 3 | ENSG00000254564 | retinitis pigmentosa GTPase regulator (RPGR) pseudogene | 2.8074 | 0.0000 | |
| 4 | ENSG00000173862 | novel transcript | 2.7560 | 0.0000 | |
| 5 | ENSG00000265315 | RN7SL199P | RNA, 7SL, cytoplasmic 199, pseudogene | 2.6302 | 0.0000 |
| 6 | ENSG00000237767 | LINC01370 | long intergenic non-protein coding RNA 1370 | 2.5850 | 0.0000 |
| 7 | ENSG00000251838 | NA | 2.5850 | 0.0002 | |
| 8 | ENSG00000262119 | novel transcript, sense intronic to NOVA1 | 2.5850 | 0.0000 | |
| 9 | ENSG00000278757 | NA | 2.4554 | 0.0000 | |
| 10 | ENSG00000258416 | novel transcript | 2.3962 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000181619 | GPR135 | G protein-coupled receptor 135 | -2.1724 | 0.0000 |
| 63340 | ENSG00000135116 | HRK | harakiri, BCL2 interacting protein | -2.1723 | 0.0000 |
| 63339 | ENSG00000189127 | ANKRD34B | ankyrin repeat domain 34B | -2.1713 | 0.0000 |
| 63338 | ENSG00000184083 | FAM120C | family with sequence similarity 120C | -2.1713 | 0.0000 |
| 63337 | ENSG00000174448 | STARD6 | StAR related lipid transfer domain containing 6 | -2.1709 | 0.0000 |
| 63336 | ENSG00000265094 | novel transcript | -2.1706 | 0.0000 | |
| 63335 | ENSG00000134438 | RAX | retina and anterior neural fold homeobox | -2.1704 | 0.0000 |
| 63334 | ENSG00000158050 | DUSP2 | dual specificity phosphatase 2 | -2.1703 | 0.0000 |
| 63333 | ENSG00000224136 | splicing factor, arginine/serine-rich 3 (SFRS3) pseudogene | -2.1692 | 0.0000 | |
| 63332 | ENSG00000273820 | USP27X | ubiquitin specific peptidase 27 X-linked | -2.1687 | 0.0000 |
