Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773556

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773556 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M183	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000224326		novel transcript	3.5850	0.0000
2	ENSG00000201567	RNA5SP510	RNA, 5S ribosomal pseudogene 510	2.8074	0.0000
3	ENSG00000254564		retinitis pigmentosa GTPase regulator (RPGR) pseudogene	2.8074	0.0000
4	ENSG00000173862		novel transcript	2.7560	0.0000
5	ENSG00000265315	RN7SL199P	RNA, 7SL, cytoplasmic 199, pseudogene	2.6302	0.0000
6	ENSG00000237767	LINC01370	long intergenic non-protein coding RNA 1370	2.5850	0.0000
7	ENSG00000251838		NA	2.5850	0.0002
8	ENSG00000262119		novel transcript, sense intronic to NOVA1	2.5850	0.0000
9	ENSG00000278757		U6 spliceosomal RNA	2.4554	0.0000
10	ENSG00000258416		novel transcript	2.3962	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000251555		novel transcript	-2.0882	0.0000
63127	ENSG00000155330	C16orf87	chromosome 16 open reading frame 87	-2.0879	0.0000
63126	ENSG00000129911	KLF16	Kruppel like factor 16	-2.0874	0.0000
63124	ENSG00000124205	EDN3	endothelin 3	-2.0868	0.0000
63123	ENSG00000154734	ADAMTS1	ADAM metallopeptidase with thrombospondin type 1 motif 1	-2.0867	0.0000
63122	ENSG00000102878	HSF4	heat shock transcription factor 4	-2.0866	0.0000
63121	ENSG00000278631	SOWAHCP5	SOWAHC pseudogene 5	-2.0865	0.0000
63120	ENSG00000282564		novel transcript	-2.0857	0.0000
63119	ENSG00000255560	OR4R2P	olfactory receptor family 4 subfamily R member 2 pseudogene	-2.0850	0.3618
10	ENSG00000258416		novel transcript	2.3962	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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