Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773556


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M183Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224326 novel transcript 3.5850 0.0000
2 ENSG00000201567 RNA5SP510 RNA, 5S ribosomal pseudogene 510 2.8074 0.0000
3 ENSG00000254564 retinitis pigmentosa GTPase regulator (RPGR) pseudogene 2.8074 0.0000
4 ENSG00000173862 novel transcript 2.7560 0.0000
5 ENSG00000265315 RN7SL199P RNA, 7SL, cytoplasmic 199, pseudogene 2.6302 0.0000
6 ENSG00000237767 LINC01370 long intergenic non-protein coding RNA 1370 2.5850 0.0000
7 ENSG00000251838 NA 2.5850 0.0002
8 ENSG00000262119 novel transcript, sense intronic to NOVA1 2.5850 0.0000
9 ENSG00000278757 U6 spliceosomal RNA 2.4554 0.0000
10 ENSG00000258416 novel transcript 2.3962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000251555 novel transcript -2.0882 0.0000
63127 ENSG00000155330 C16orf87 chromosome 16 open reading frame 87 -2.0879 0.0000
63126 ENSG00000129911 KLF16 Kruppel like factor 16 -2.0874 0.0000
63124 ENSG00000124205 EDN3 endothelin 3 -2.0868 0.0000
63123 ENSG00000154734 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 -2.0867 0.0000
63122 ENSG00000102878 HSF4 heat shock transcription factor 4 -2.0866 0.0000
63121 ENSG00000278631 SOWAHCP5 SOWAHC pseudogene 5 -2.0865 0.0000
63120 ENSG00000282564 novel transcript -2.0857 0.0000
63119 ENSG00000255560 OR4R2P olfactory receptor family 4 subfamily R member 2 pseudogene -2.0850 0.3618
10 ENSG00000258416 novel transcript 2.3962 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...