Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773557
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773557
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M184
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000251562
MALAT1
metastasis associated lung adenocarcinoma transcript 1
4.8814
0.0000
2
ENSG00000278217
NA
4.8814
0.0000
3
ENSG00000274072
NA
4.7638
0.0000
4
ENSG00000170421
KRT8
keratin 8
4.3692
0.0000
5
ENSG00000232573
RPL3P4
ribosomal protein L3 pseudogene 4
4.1519
0.0000
6
ENSG00000269968
novel transcript, antisense to GAPDH
4.1511
0.0000
7
ENSG00000143933
CALM2
calmodulin 2
4.1450
0.0000
8
ENSG00000111057
KRT18
keratin 18
4.0507
0.0000
9
ENSG00000253219
KRT18P41
keratin 18 pseudogene 41
4.0442
0.0000
10
ENSG00000171798
KNDC1
kinase non-catalytic C-lobe domain containing 1
3.9069
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000143603
KCNN3
potassium calcium-activated channel subfamily N member 3
-2.4433
0.0000
63172
ENSG00000234936
novel transcript
-2.4429
0.0000
63171
ENSG00000233656
novel transcript
-2.4421
0.0000
63170
ENSG00000231993
EP300-AS1
EP300 antisense RNA 1
-2.4417
0.0000
63169
ENSG00000280927
CTBP1-AS
CTBP1 antisense RNA
-2.4411
0.0000
63168
ENSG00000267130
novel transcript
-2.4402
0.0000
63167
ENSG00000144847
IGSF11
immunoglobulin superfamily member 11
-2.4397
0.0000
63166
ENSG00000231901
novel transcript
-2.4387
0.0342
63165
ENSG00000127603
MACF1
microtubule actin crosslinking factor 1
-2.4381
0.0000
63164
ENSG00000244486
SCARF2
scavenger receptor class F member 2
-2.4359
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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