Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773557

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773557 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M184	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000251562	MALAT1	metastasis associated lung adenocarcinoma transcript 1	4.8814	0.0000
2	ENSG00000278217		NA	4.8814	0.0000
3	ENSG00000274072		NA	4.7638	0.0000
4	ENSG00000170421	KRT8	keratin 8	4.3692	0.0000
5	ENSG00000232573	RPL3P4	ribosomal protein L3 pseudogene 4	4.1519	0.0000
6	ENSG00000269968		novel transcript, antisense to GAPDH	4.1511	0.0000
7	ENSG00000143933	CALM2	calmodulin 2	4.1450	0.0000
8	ENSG00000111057	KRT18	keratin 18	4.0507	0.0000
9	ENSG00000253219	KRT18P41	keratin 18 pseudogene 41	4.0442	0.0000
10	ENSG00000171798	KNDC1	kinase non-catalytic C-lobe domain containing 1	3.9069	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000143603	KCNN3	potassium calcium-activated channel subfamily N member 3	-2.4433	0.0000
63172	ENSG00000234936		novel transcript	-2.4429	0.0000
63171	ENSG00000233656		novel transcript	-2.4421	0.0000
63170	ENSG00000231993	EP300-AS1	EP300 antisense RNA 1	-2.4417	0.0000
63169	ENSG00000280927	CTBP1-AS	CTBP1 antisense RNA	-2.4411	0.0000
63168	ENSG00000267130		novel transcript	-2.4402	0.0000
63167	ENSG00000144847	IGSF11	immunoglobulin superfamily member 11	-2.4397	0.0000
63166	ENSG00000231901		novel transcript	-2.4387	0.0342
63165	ENSG00000127603	MACF1	microtubule actin crosslinking factor 1	-2.4381	0.0000
63164	ENSG00000244486	SCARF2	scavenger receptor class F member 2	-2.4359	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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