Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773557

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773557


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M184Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 4.8814 0.0000
2 ENSG00000278217 NA 4.8814 0.0000
3 ENSG00000274072 NA 4.7638 0.0000
4 ENSG00000170421 KRT8 keratin 8 4.3692 0.0000
5 ENSG00000232573 RPL3P4 ribosomal protein L3 pseudogene 4 4.1519 0.0000
6 ENSG00000269968 novel transcript, antisense to GAPDH 4.1511 0.0000
7 ENSG00000143933 CALM2 calmodulin 2 4.1450 0.0000
8 ENSG00000111057 KRT18 keratin 18 4.0507 0.0000
9 ENSG00000253219 KRT18P41 keratin 18 pseudogene 41 4.0442 0.0000
10 ENSG00000171798 KNDC1 kinase non-catalytic C-lobe domain containing 1 3.9069 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000143603 KCNN3 potassium calcium-activated channel subfamily N member 3 -2.4433 0.0000
63172 ENSG00000234936 novel transcript -2.4429 0.0000
63171 ENSG00000233656 novel transcript -2.4421 0.0000
63170 ENSG00000231993 EP300-AS1 EP300 antisense RNA 1 -2.4417 0.0000
63169 ENSG00000280927 CTBP1-AS CTBP1 antisense RNA -2.4411 0.0000
63168 ENSG00000267130 novel transcript -2.4402 0.0000
63167 ENSG00000144847 IGSF11 immunoglobulin superfamily member 11 -2.4397 0.0000
63166 ENSG00000231901 novel transcript -2.4387 0.0342
63165 ENSG00000127603 MACF1 microtubule actin crosslinking factor 1 -2.4381 0.0000
63164 ENSG00000244486 SCARF2 scavenger receptor class F member 2 -2.4359 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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