Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773557

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773557 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M184	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000251562	MALAT1	metastasis associated lung adenocarcinoma transcript 1	4.8814	0.0000
2	ENSG00000278217		NA	4.8814	0.0000
3	ENSG00000274072		NA	4.7638	0.0000
4	ENSG00000170421	KRT8	keratin 8	4.3692	0.0000
5	ENSG00000232573	RPL3P4	ribosomal protein L3 pseudogene 4	4.1519	0.0000
6	ENSG00000269968		novel transcript, antisense to GAPDH	4.1511	0.0000
7	ENSG00000143933	CALM2	calmodulin 2	4.1450	0.0000
8	ENSG00000111057	KRT18	keratin 18	4.0507	0.0000
9	ENSG00000253219	KRT18P41	keratin 18 pseudogene 41	4.0442	0.0000
10	ENSG00000171798	KNDC1	kinase non-catalytic C-lobe domain containing 1	3.9069	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000102172	SMS	spermine synthase	-2.4713	0.0000
63220	ENSG00000272630		novel transcript	-2.4709	0.0000
63219	ENSG00000185022	MAFF	MAF bZIP transcription factor F	-2.4708	0.0000
63218	ENSG00000168453	HR	HR lysine demethylase and nuclear receptor corepressor	-2.4694	0.0000
63217	ENSG00000185716	MOSMO	modulator of smoothened	-2.4684	0.0000
63216	ENSG00000249828		sorting nexin 18 (SNX18) pseudogene	-2.4680	0.0089
63215	ENSG00000245148	ARAP1-AS2	ARAP1 antisense RNA 2	-2.4668	0.0000
63214	ENSG00000266477	RN7SL616P	RNA, 7SL, cytoplasmic 616, pseudogene	-2.4666	0.0000
63213	ENSG00000278110	SUSD2P2	sushi domain containing 2 pseudogene 2	-2.4650	0.0474
63212	ENSG00000102780	DGKH	diacylglycerol kinase eta	-2.4649	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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