SHOGoiN Cell Methylome: GSM2773557
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773557 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M184 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000251562 | MALAT1 | metastasis associated lung adenocarcinoma transcript 1 | 4.8814 | 0.0000 |
| 2 | ENSG00000278217 | NA | 4.8814 | 0.0000 | |
| 3 | ENSG00000274072 | NA | 4.7638 | 0.0000 | |
| 4 | ENSG00000170421 | KRT8 | keratin 8 | 4.3692 | 0.0000 |
| 5 | ENSG00000232573 | RPL3P4 | ribosomal protein L3 pseudogene 4 | 4.1519 | 0.0000 |
| 6 | ENSG00000269968 | novel transcript, antisense to GAPDH | 4.1511 | 0.0000 | |
| 7 | ENSG00000143933 | CALM2 | calmodulin 2 | 4.1450 | 0.0000 |
| 8 | ENSG00000111057 | KRT18 | keratin 18 | 4.0507 | 0.0000 |
| 9 | ENSG00000253219 | KRT18P41 | keratin 18 pseudogene 41 | 4.0442 | 0.0000 |
| 10 | ENSG00000171798 | KNDC1 | kinase non-catalytic C-lobe domain containing 1 | 3.9069 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000147677 | EIF3H | eukaryotic translation initiation factor 3 subunit H | -2.5424 | 0.0000 |
| 63340 | ENSG00000156395 | SORCS3 | sortilin related VPS10 domain containing receptor 3 | -2.5414 | 0.0000 |
| 63339 | ENSG00000233101 | HOXB-AS3 | HOXB cluster antisense RNA 3 | -2.5410 | 0.0000 |
| 63338 | ENSG00000283159 | MIR665 | microRNA 665 | -2.5403 | 0.0000 |
| 63337 | ENSG00000199151 | MIR337 | microRNA 337 | -2.5403 | 0.0000 |
| 63336 | ENSG00000141337 | ARSG | arylsulfatase G | -2.5403 | 0.0000 |
| 63335 | ENSG00000160472 | TMEM190 | transmembrane protein 190 | -2.5401 | 0.0000 |
| 63334 | ENSG00000253032 | RNU6-299P | RNA, U6 small nuclear 299, pseudogene | -2.5394 | 0.0000 |
| 63333 | ENSG00000255500 | pantothenate kinase 3 (PANK3) pseudogene | -2.5388 | 0.0000 | |
| 63332 | ENSG00000264063 | NA | -2.5387 | 0.0000 |
