Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773557

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773557


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M184Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 4.8814 0.0000
2 ENSG00000278217 NA 4.8814 0.0000
3 ENSG00000274072 NA 4.7638 0.0000
4 ENSG00000170421 KRT8 keratin 8 4.3692 0.0000
5 ENSG00000232573 RPL3P4 ribosomal protein L3 pseudogene 4 4.1519 0.0000
6 ENSG00000269968 novel transcript, antisense to GAPDH 4.1511 0.0000
7 ENSG00000143933 CALM2 calmodulin 2 4.1450 0.0000
8 ENSG00000111057 KRT18 keratin 18 4.0507 0.0000
9 ENSG00000253219 KRT18P41 keratin 18 pseudogene 41 4.0442 0.0000
10 ENSG00000171798 KNDC1 kinase non-catalytic C-lobe domain containing 1 3.9069 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000102172 SMS spermine synthase -2.4713 0.0000
63220 ENSG00000272630 novel transcript -2.4709 0.0000
63219 ENSG00000185022 MAFF MAF bZIP transcription factor F -2.4708 0.0000
63218 ENSG00000168453 HR HR lysine demethylase and nuclear receptor corepressor -2.4694 0.0000
63217 ENSG00000185716 MOSMO modulator of smoothened -2.4684 0.0000
63216 ENSG00000249828 sorting nexin 18 (SNX18) pseudogene -2.4680 0.0089
63215 ENSG00000245148 ARAP1-AS2 ARAP1 antisense RNA 2 -2.4668 0.0000
63214 ENSG00000266477 RN7SL616P RNA, 7SL, cytoplasmic 616, pseudogene -2.4666 0.0000
63213 ENSG00000278110 SUSD2P2 sushi domain containing 2 pseudogene 2 -2.4650 0.0474
63212 ENSG00000102780 DGKH diacylglycerol kinase eta -2.4649 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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