Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773558

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773558


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M185Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000215284 CHMP5P1 CHMP5 pseudogene 1 2.8074 0.0000
2 ENSG00000272990 novel transcript, antisense to KCNAB1 2.8074 0.0000
3 ENSG00000199879 RNVU1-22 RNA, variant U1 small nuclear 22 2.5850 0.0000
4 ENSG00000214067 ribosomal protein L21 (RPL21) pseudogene 2.3219 0.0007
5 ENSG00000255860 folate receptor 3 (gamma) (FOLR3) pseudogene 2.3219 0.0007
7 ENSG00000277752 NA 2.3219 0.0007
8 ENSG00000232149 FERP1 FER tyrosine kinase pseudogene 1 2.2925 0.0000
9 ENSG00000226448 RPL7AP51 ribosomal protein L7a pseudogene 51 2.1768 0.0000
10 ENSG00000258930 tetratricopeptide repeat domain 7B (TTC7B) pseudogene 2.1510 0.0000
63119 ENSG00000212559 RNA5SP35 RNA, 5S ribosomal pseudogene 35 -1.8962 0.2303

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000207361 RNU6-178P RNA, U6 small nuclear 178, pseudogene -1.8977 0.0000
63127 ENSG00000116096 SPR sepiapterin reductase -1.8976 0.0000
63126 ENSG00000129654 FOXJ1 forkhead box J1 -1.8973 0.0000
63125 ENSG00000253563 NKX2-1-AS1 NKX2-1 antisense RNA 1 -1.8971 0.0000
63124 ENSG00000241560 ZBTB20-AS1 ZBTB20 antisense RNA 1 -1.8965 0.0000
63123 ENSG00000109158 GABRA4 gamma-aminobutyric acid type A receptor subunit alpha4 -1.8963 0.0000
63122 ENSG00000277478 MIR6165 microRNA 6165 -1.8963 0.0000
63121 ENSG00000155330 C16orf87 chromosome 16 open reading frame 87 -1.8963 0.0000
63120 ENSG00000108813 DLX4 distal-less homeobox 4 -1.8963 0.0000
63119 ENSG00000212559 RNA5SP35 RNA, 5S ribosomal pseudogene 35 -1.8962 0.2303

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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