Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773559

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773559


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M186Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201846 RNA5SP166 RNA, 5S ribosomal pseudogene 166 3.1699 0.0000
2 ENSG00000046604 DSG2 desmoglein 2 3.0000 0.0000
3 ENSG00000165168 CYBB cytochrome b-245 beta chain 3.0000 0.0000
4 ENSG00000249873 LINC02372 long intergenic non-protein coding RNA 2372 3.0000 0.0000
5 ENSG00000266521 novel transcript 3.0000 0.0000
6 ENSG00000234652 AGPAT5P1 1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene 1 2.8896 0.0000
7 ENSG00000237876 AKR1B1P4 aldo-keto reductase family 1 member B1 pseudogene 4 2.8205 0.0000
8 ENSG00000184564 SLITRK6 SLIT and NTRK like family member 6 2.8074 0.0000
9 ENSG00000228835 novel transcript, antisense to KLHL14 2.8074 0.0000
10 ENSG00000233544 EIF3KP2 eukaryotic translation initiation factor 3 subunit K pseudogene 2 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000252338 RNU6-503P RNA, U6 small nuclear 503, pseudogene -2.2298 0.0270
63127 ENSG00000266019 MIR3609 microRNA 3609 -2.2297 0.0000
63126 ENSG00000242411 ribosomal protein L13 (RPL13) pseudogene -2.2294 0.0000
63125 ENSG00000159761 C16orf86 chromosome 16 open reading frame 86 -2.2293 0.0000
63124 ENSG00000236775 pseudogene similar to part of zinc finger protein (ZNF519) -2.2291 0.0000
63123 ENSG00000239255 pseudogene similar to part of guanine nucleotide binding protein (G protein), beta polypeptide 1GNB1 -2.2289 0.0000
63121 ENSG00000198839 ZNF277 zinc finger protein 277 -2.2283 0.0000
63120 ENSG00000177519 RPRM reprimo, TP53 dependent G2 arrest mediator homolog -2.2283 0.0000
63119 ENSG00000200624 RNA5S6 RNA, 5S ribosomal 6 -2.2274 0.0008
10 ENSG00000233544 EIF3KP2 eukaryotic translation initiation factor 3 subunit K pseudogene 2 2.8074 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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