SHOGoiN Cell Methylome: GSM2773559

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773559


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M186Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201846 RNA5SP166 RNA, 5S ribosomal pseudogene 166 3.1699 0.0000
2 ENSG00000046604 DSG2 desmoglein 2 3.0000 0.0000
3 ENSG00000165168 CYBB cytochrome b-245 beta chain 3.0000 0.0000
4 ENSG00000249873 LINC02372 long intergenic non-protein coding RNA 2372 3.0000 0.0000
5 ENSG00000266521 novel transcript 3.0000 0.0000
6 ENSG00000234652 AGPAT5P1 1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene 1 2.8896 0.0000
7 ENSG00000237876 AKR1B1P4 aldo-keto reductase family 1 member B1 pseudogene 4 2.8205 0.0000
8 ENSG00000184564 SLITRK6 SLIT and NTRK like family member 6 2.8074 0.0000
9 ENSG00000228835 novel transcript, antisense to KLHL14 2.8074 0.0000
10 ENSG00000233544 EIF3KP2 eukaryotic translation initiation factor 3 subunit K pseudogene 2 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000274817 NA -2.3098 0.0000
63340 ENSG00000270487 novel transcript, antisense to ARID1B -2.3096 0.0000
63339 ENSG00000229594 X antigen family (XAGE) pseudogene -2.3094 0.0077
63338 ENSG00000173366 novel twinfilin, actin-binding protein, homolog 2 (Drosophila) (TWF2) and toll-like receptor 9 (TLR9) protein -2.3093 0.0000
63337 ENSG00000181585 TMIE transmembrane inner ear -2.3092 0.0000
63336 ENSG00000118432 CNR1 cannabinoid receptor 1 -2.3089 0.0000
63335 ENSG00000266072 MIR5693 microRNA 5693 -2.3080 0.0001
63334 ENSG00000182103 FAM181B family with sequence similarity 181 member B -2.3079 0.0000
63333 ENSG00000185090 MANEAL mannosidase endo-alpha like -2.3077 0.0000
63332 ENSG00000259456 ADNP-AS1 ADNP antisense RNA 1 -2.3071 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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