SHOGoiN Cell Methylome: GSM2773560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773560


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M187Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235279 novel transcript 2.8074 0.0001
2 ENSG00000250768 DPP3P1 dipeptidyl peptidase 3 pseudogene 1 2.8074 0.0001
3 ENSG00000188993 LRRC66 leucine rich repeat containing 66 2.5850 0.0004
4 ENSG00000145817 YIPF5 Yip1 domain family member 5 2.3219 0.0000
5 ENSG00000200238 RNA5SP133 RNA, 5S ribosomal pseudogene 133 2.3219 0.0018
6 ENSG00000201666 NA 2.3219 0.0018
7 ENSG00000237467 USP9YP35 USP9Y pseudogene 35 2.3219 0.0018
8 ENSG00000248237 protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform (PPP2R2C) pseudogene 2.3219 0.0018
9 ENSG00000260223 novel transcript 2.3219 0.0018
10 ENSG00000274662 RN7SKP236 RN7SK pseudogene 236 2.3219 0.0018

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000277450 novel transcript, sense intronic to transcript readthrough between TMEM199 and SARM1 -1.8641 0.0000
63340 ENSG00000128609 NDUFA5 NADH:ubiquinone oxidoreductase subunit A5 -1.8641 0.0000
63339 ENSG00000213145 CRIP1 cysteine rich protein 1 -1.8637 0.0000
63338 ENSG00000267735 novel transcript, antisense to DNASE2 -1.8637 0.0000
63337 ENSG00000181541 MAB21L2 mab-21 like 2 -1.8636 0.0000
63336 ENSG00000149243 KLHL35 kelch like family member 35 -1.8633 0.0000
63335 ENSG00000243479 MNX1-AS1 MNX1 antisense RNA 1 (head to head) -1.8629 0.0000
63334 ENSG00000282143 novel transcript -1.8628 0.0000
63333 ENSG00000261360 novel transcript, antisense to FAM105B -1.8621 0.0000
63332 ENSG00000199072 MIRLET7F1 microRNA let-7f-1 -1.8620 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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