Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773560


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M187Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235279 novel transcript 2.8074 0.0001
2 ENSG00000250768 DPP3P1 DPP3 pseudogene 1 2.8074 0.0001
3 ENSG00000188993 LRRC66 leucine rich repeat containing 66 2.5850 0.0004
4 ENSG00000145817 YIPF5 Yip1 domain family member 5 2.3219 0.0000
5 ENSG00000200238 RNA5SP133 RNA, 5S ribosomal pseudogene 133 2.3219 0.0018
6 ENSG00000201666 NA 2.3219 0.0018
7 ENSG00000237467 USP9YP35 USP9Y pseudogene 35 2.3219 0.0018
8 ENSG00000248237 protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform (PPP2R2C) pseudogene 2.3219 0.0018
9 ENSG00000260223 novel transcript 2.3219 0.0018
10 ENSG00000274662 RN7SKP236 RN7SK pseudogene 236 2.3219 0.0018

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000245910 SNHG6 small nucleolar RNA host gene 6 -1.8058 0.0000
63127 ENSG00000164066 INTU inturned planar cell polarity protein -1.8057 0.0000
63126 ENSG00000224531 SMIM13 small integral membrane protein 13 -1.8057 0.0000
63125 ENSG00000284375 MIR19B1 microRNA 19b-1 -1.8055 0.0000
63124 ENSG00000283705 MIR92A1 microRNA 92a-1 -1.8055 0.0000
63123 ENSG00000168564 CDKN2AIP CDKN2A interacting protein -1.8053 0.0000
63122 ENSG00000138802 SEC24B SEC24 homolog B, COPII coat complex component -1.8052 0.0000
63121 ENSG00000256779 serine/arginine-rich splicing factor 8 (SRSF8) pseudogene -1.8051 0.0000
63120 ENSG00000169184 MN1 MN1 proto-oncogene, transcriptional regulator -1.8044 0.0000
63119 ENSG00000233708 epidermodysplasia verruciformis 1 (EVER1) pseudogene -1.8043 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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