Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773561


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M188Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253493 interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene 2.3219 0.0019
2 ENSG00000270911 CTAGE family, member 5 (CTAGE5) pseudogene 2.3219 0.0019
3 ENSG00000271898 MIR4791 microRNA 4791 2.3219 0.0019
4 ENSG00000234322 ST13P18 ST13, Hsp70 interacting protein pseudogene 18 2.1405 0.0000
5 ENSG00000226827 NPM1P11 nucleophosmin 1 pseudogene 11 2.1288 0.0000
6 ENSG00000212459 RNU6-695P RNA, U6 small nuclear 695, pseudogene 2.1175 0.0000
7 ENSG00000251858 NA 2.0850 0.0000
8 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.0566 0.0000
9 ENSG00000254577 novel transcript, sense overlapping TTC17 2.0566 0.0000
10 ENSG00000236720 LINC01741 long intergenic non-protein coding RNA 1741 2.0277 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000232991 GACAT1 gastric cancer associated transcript 1 -1.9169 0.0000
63127 ENSG00000100429 HDAC10 histone deacetylase 10 -1.9163 0.0000
63126 ENSG00000219863 RPL31P28 ribosomal protein L31 pseudogene 28 -1.9143 0.0000
63125 ENSG00000187664 HAPLN4 hyaluronan and proteoglycan link protein 4 -1.9141 0.0000
63124 ENSG00000279068 novel transcript -1.9140 0.0000
63123 ENSG00000272674 PCDHB16 protocadherin beta 16 -1.9140 0.0000
63122 ENSG00000206625 RNU6-1 RNA, U6 small nuclear 1 -1.9139 0.0000
63121 ENSG00000188133 TMEM215 transmembrane protein 215 -1.9138 0.0000
63120 ENSG00000270259 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) (DSN1) pseudogene -1.9137 0.0000
63119 ENSG00000126062 TMEM115 transmembrane protein 115 -1.9135 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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