Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773561
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773561
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M188
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000253493
interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene
2.3219
0.0019
2
ENSG00000270911
CTAGE family, member 5 (CTAGE5) pseudogene
2.3219
0.0019
3
ENSG00000271898
MIR4791
microRNA 4791
2.3219
0.0019
4
ENSG00000234322
ST13P18
ST13, Hsp70 interacting protein pseudogene 18
2.1405
0.0000
5
ENSG00000226827
NPM1P11
nucleophosmin 1 pseudogene 11
2.1288
0.0000
6
ENSG00000212459
RNU6-695P
RNA, U6 small nuclear 695, pseudogene
2.1175
0.0000
7
ENSG00000251858
NA
2.0850
0.0000
8
ENSG00000242922
RPL21P104
ribosomal protein L21 pseudogene 104
2.0566
0.0000
9
ENSG00000254577
novel transcript, sense overlapping TTC17
2.0566
0.0000
10
ENSG00000236720
LINC01741
long intergenic non-protein coding RNA 1741
2.0277
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000232991
GACAT1
gastric cancer associated transcript 1
-1.9169
0.0000
63127
ENSG00000100429
HDAC10
histone deacetylase 10
-1.9163
0.0000
63126
ENSG00000219863
RPL31P28
ribosomal protein L31 pseudogene 28
-1.9143
0.0000
63125
ENSG00000187664
HAPLN4
hyaluronan and proteoglycan link protein 4
-1.9141
0.0000
63124
ENSG00000279068
novel transcript
-1.9140
0.0000
63123
ENSG00000272674
PCDHB16
protocadherin beta 16
-1.9140
0.0000
63122
ENSG00000206625
RNU6-1
RNA, U6 small nuclear 1
-1.9139
0.0000
63121
ENSG00000188133
TMEM215
transmembrane protein 215
-1.9138
0.0000
63120
ENSG00000270259
DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) (DSN1) pseudogene
-1.9137
0.0000
63119
ENSG00000126062
TMEM115
transmembrane protein 115
-1.9135
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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