SHOGoiN Cell Methylome: GSM2773561
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773561 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M188 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000253493 | interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene | 2.3219 | 0.0019 | |
| 2 | ENSG00000270911 | CTAGE family, member 5 (CTAGE5) pseudogene | 2.3219 | 0.0019 | |
| 3 | ENSG00000271898 | MIR4791 | microRNA 4791 | 2.3219 | 0.0019 |
| 4 | ENSG00000234322 | ST13P18 | ST13, Hsp70 interacting protein pseudogene 18 | 2.1405 | 0.0000 |
| 5 | ENSG00000226827 | NPM1P11 | nucleophosmin 1 pseudogene 11 | 2.1288 | 0.0000 |
| 6 | ENSG00000212459 | RNU6-695P | RNA, U6 small nuclear 695, pseudogene | 2.1175 | 0.0000 |
| 7 | ENSG00000251858 | NA | 2.0850 | 0.0000 | |
| 8 | ENSG00000242922 | RPL21P104 | ribosomal protein L21 pseudogene 104 | 2.0566 | 0.0000 |
| 9 | ENSG00000254577 | novel transcript, sense overlapping TTC17 | 2.0566 | 0.0000 | |
| 10 | ENSG00000236720 | LINC01741 | long intergenic non-protein coding RNA 1741 | 2.0277 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000201725 | RNU6-304P | RNA, U6 small nuclear 304, pseudogene | -1.9893 | 0.0000 |
| 63340 | ENSG00000182134 | TDRKH | tudor and KH domain containing | -1.9892 | 0.0000 |
| 63339 | ENSG00000274630 | novel transcript, antisense to ACLY | -1.9879 | 0.0000 | |
| 63338 | ENSG00000169714 | CNBP | CCHC-type zinc finger nucleic acid binding protein | -1.9878 | 0.0000 |
| 63337 | ENSG00000200624 | RNA5S6 | RNA, 5S ribosomal 6 | -1.9878 | 0.0000 |
| 63336 | ENSG00000225556 | C2CD4D | C2 calcium dependent domain containing 4D | -1.9877 | 0.0000 |
| 63335 | ENSG00000275155 | novel transcript, sense intronic to ZNF423 | -1.9873 | 0.0000 | |
| 63334 | ENSG00000242893 | RN7SL413P | RNA, 7SL, cytoplasmic 413, pseudogene | -1.9873 | 0.0000 |
| 63333 | ENSG00000230306 | BANF1P2 | barrier to autointegration factor 1 pseudogene 2 | -1.9866 | 0.0000 |
| 63332 | ENSG00000102109 | PCSK1N | proprotein convertase subtilisin/kexin type 1 inhibitor | -1.9863 | 0.0000 |
