SHOGoiN Cell Methylome: GSM2773561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773561


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M188Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253493 interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene 2.3219 0.0019
2 ENSG00000270911 CTAGE family, member 5 (CTAGE5) pseudogene 2.3219 0.0019
3 ENSG00000271898 MIR4791 microRNA 4791 2.3219 0.0019
4 ENSG00000234322 ST13P18 ST13, Hsp70 interacting protein pseudogene 18 2.1405 0.0000
5 ENSG00000226827 NPM1P11 nucleophosmin 1 pseudogene 11 2.1288 0.0000
6 ENSG00000212459 RNU6-695P RNA, U6 small nuclear 695, pseudogene 2.1175 0.0000
7 ENSG00000251858 NA 2.0850 0.0000
8 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.0566 0.0000
9 ENSG00000254577 novel transcript, sense overlapping TTC17 2.0566 0.0000
10 ENSG00000236720 LINC01741 long intergenic non-protein coding RNA 1741 2.0277 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000201725 RNU6-304P RNA, U6 small nuclear 304, pseudogene -1.9893 0.0000
63340 ENSG00000182134 TDRKH tudor and KH domain containing -1.9892 0.0000
63339 ENSG00000274630 novel transcript, antisense to ACLY -1.9879 0.0000
63338 ENSG00000169714 CNBP CCHC-type zinc finger nucleic acid binding protein -1.9878 0.0000
63337 ENSG00000200624 RNA5S6 RNA, 5S ribosomal 6 -1.9878 0.0000
63336 ENSG00000225556 C2CD4D C2 calcium dependent domain containing 4D -1.9877 0.0000
63335 ENSG00000275155 novel transcript, sense intronic to ZNF423 -1.9873 0.0000
63334 ENSG00000242893 RN7SL413P RNA, 7SL, cytoplasmic 413, pseudogene -1.9873 0.0000
63333 ENSG00000230306 BANF1P2 barrier to autointegration factor 1 pseudogene 2 -1.9866 0.0000
63332 ENSG00000102109 PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor -1.9863 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...