Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773561

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773561 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M188	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000253493		interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene	2.3219	0.0019
2	ENSG00000270911		CTAGE family, member 5 (CTAGE5) pseudogene	2.3219	0.0019
3	ENSG00000271898	MIR4791	microRNA 4791	2.3219	0.0019
4	ENSG00000234322	ST13P18	ST13, Hsp70 interacting protein pseudogene 18	2.1405	0.0000
5	ENSG00000226827	NPM1P11	nucleophosmin 1 pseudogene 11	2.1288	0.0000
6	ENSG00000212459	RNU6-695P	RNA, U6 small nuclear 695, pseudogene	2.1175	0.0000
7	ENSG00000251858		NA	2.0850	0.0000
8	ENSG00000242922	RPL21P104	ribosomal protein L21 pseudogene 104	2.0566	0.0000
9	ENSG00000254577		novel transcript, sense overlapping TTC17	2.0566	0.0000
10	ENSG00000236720	LINC01741	long intergenic non-protein coding RNA 1741	2.0277	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000232991	GACAT1	gastric cancer associated transcript 1	-1.9169	0.0000
63127	ENSG00000100429	HDAC10	histone deacetylase 10	-1.9163	0.0000
63126	ENSG00000219863	RPL31P28	ribosomal protein L31 pseudogene 28	-1.9143	0.0000
63125	ENSG00000187664	HAPLN4	hyaluronan and proteoglycan link protein 4	-1.9141	0.0000
63124	ENSG00000279068		novel transcript	-1.9140	0.0000
63123	ENSG00000272674	PCDHB16	protocadherin beta 16	-1.9140	0.0000
63122	ENSG00000206625	RNU6-1	RNA, U6 small nuclear 1	-1.9139	0.0000
63121	ENSG00000188133	TMEM215	transmembrane protein 215	-1.9138	0.0000
63120	ENSG00000270259		DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) (DSN1) pseudogene	-1.9137	0.0000
63119	ENSG00000126062	TMEM115	transmembrane protein 115	-1.9135	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...