SHOGoiN Cell Methylome: GSM2773562
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773562 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M189 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000204172 | AGAP9 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 | 3.0000 | 0.0000 |
| 2 | ENSG00000264281 | ribosomal protein L41 (RPL41) pseudogene | 2.8074 | 0.0002 | |
| 3 | ENSG00000201959 | NA | 2.5850 | 0.0000 | |
| 4 | ENSG00000233448 | PMS2P9 | PMS1 homolog 2, mismatch repair system component pseudogene 9 | 2.5850 | 0.0000 |
| 5 | ENSG00000249766 | keratin 8, type II (KRT8) pseudogene | 2.5850 | 0.0009 | |
| 6 | ENSG00000067533 | RRP15 | ribosomal RNA processing 15 homolog | 2.3219 | 0.0000 |
| 7 | ENSG00000163106 | HPGDS | hematopoietic prostaglandin D synthase | 2.3219 | 0.0000 |
| 8 | ENSG00000198829 | SUCNR1 | succinate receptor 1 | 2.3219 | 0.0000 |
| 9 | ENSG00000206889 | RNU6-1200P | RNA, U6 small nuclear 1200, pseudogene | 2.3219 | 0.0000 |
| 10 | ENSG00000215540 | RBMY2CP | RNA binding motif protein, Y-linked, family 2, member C pseudogene | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000223660 | novel transcript | -1.7462 | 0.0000 | |
| 63340 | ENSG00000268870 | novel zinc finger protein | -1.7460 | 0.0000 | |
| 63339 | ENSG00000180855 | ZNF443 | zinc finger protein 443 | -1.7460 | 0.0000 |
| 63338 | ENSG00000158258 | CLSTN2 | calsyntenin 2 | -1.7454 | 0.0000 |
| 63337 | ENSG00000239969 | uncharacterized LOC100289561 | -1.7445 | 0.0000 | |
| 63336 | ENSG00000237311 | novel transcript | -1.7443 | 0.1374 | |
| 63335 | ENSG00000199411 | NA | -1.7433 | 0.0000 | |
| 63334 | ENSG00000246308 | novel transcript, antisense to ZBED5 | -1.7421 | 0.0000 | |
| 63333 | ENSG00000231622 | RPS29P7 | ribosomal protein S29 pseudogene 7 | -1.7418 | 0.0000 |
| 63332 | ENSG00000238387 | NA | -1.7414 | 0.0000 |
