SHOGoiN Cell Methylome: GSM2773562

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773562


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M189Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204172 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 3.0000 0.0000
2 ENSG00000264281 ribosomal protein L41 (RPL41) pseudogene 2.8074 0.0002
3 ENSG00000201959 NA 2.5850 0.0000
4 ENSG00000233448 PMS2P9 PMS1 homolog 2, mismatch repair system component pseudogene 9 2.5850 0.0000
5 ENSG00000249766 keratin 8, type II (KRT8) pseudogene 2.5850 0.0009
6 ENSG00000067533 RRP15 ribosomal RNA processing 15 homolog 2.3219 0.0000
7 ENSG00000163106 HPGDS hematopoietic prostaglandin D synthase 2.3219 0.0000
8 ENSG00000198829 SUCNR1 succinate receptor 1 2.3219 0.0000
9 ENSG00000206889 RNU6-1200P RNA, U6 small nuclear 1200, pseudogene 2.3219 0.0000
10 ENSG00000215540 RBMY2CP RNA binding motif protein, Y-linked, family 2, member C pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000223660 novel transcript -1.7462 0.0000
63340 ENSG00000268870 novel zinc finger protein -1.7460 0.0000
63339 ENSG00000180855 ZNF443 zinc finger protein 443 -1.7460 0.0000
63338 ENSG00000158258 CLSTN2 calsyntenin 2 -1.7454 0.0000
63337 ENSG00000239969 uncharacterized LOC100289561 -1.7445 0.0000
63336 ENSG00000237311 novel transcript -1.7443 0.1374
63335 ENSG00000199411 NA -1.7433 0.0000
63334 ENSG00000246308 novel transcript, antisense to ZBED5 -1.7421 0.0000
63333 ENSG00000231622 RPS29P7 ribosomal protein S29 pseudogene 7 -1.7418 0.0000
63332 ENSG00000238387 NA -1.7414 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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