Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773562

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773562 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M189	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000204172	AGAP9	ArfGAP with GTPase domain, ankyrin repeat and PH domain 9	3.0000	0.0000
2	ENSG00000264281		ribosomal protein L41 (RPL41) pseudogene	2.8074	0.0002
3	ENSG00000201959		Y RNA	2.5850	0.0000
4	ENSG00000233448	PMS2P9	PMS1 homolog 2, mismatch repair system component pseudogene 9	2.5850	0.0000
5	ENSG00000249766		keratin 8, type II (KRT8) pseudogene	2.5850	0.0009
6	ENSG00000067533	RRP15	ribosomal RNA processing 15 homolog	2.3219	0.0000
7	ENSG00000163106	HPGDS	hematopoietic prostaglandin D synthase	2.3219	0.0000
8	ENSG00000198829	SUCNR1	succinate receptor 1	2.3219	0.0000
9	ENSG00000206889	RNU6-1200P	RNA, U6 small nuclear 1200, pseudogene	2.3219	0.0000
10	ENSG00000215540	RBMY2CP	RNA binding motif protein Y-linked family 2 member C, pseudogene	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000221949	LINC01465	long intergenic non-protein coding RNA 1465	-1.6858	0.0000
63127	ENSG00000199179	MIRLET7I	microRNA let-7i	-1.6858	0.0000
63126	ENSG00000177383	MAGEF1	MAGE family member F1	-1.6853	0.0000
63125	ENSG00000108684	ASIC2	acid sensing ion channel subunit 2	-1.6851	0.0000
63124	ENSG00000268509		novel transcript, antisense to EDEM1	-1.6848	0.0000
63123	ENSG00000236301	MRGPRG-AS1	MRGPRG antisense RNA 1	-1.6846	0.0000
63122	ENSG00000236896		novel transcript	-1.6846	0.0000
63121	ENSG00000180398	MCFD2	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	-1.6845	0.0000
63120	ENSG00000176894	PXMP2	peroxisomal membrane protein 2	-1.6842	0.0000
63119	ENSG00000149948	HMGA2	high mobility group AT-hook 2	-1.6829	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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