Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773562
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773562
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M189
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000204172
AGAP9
ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
3.0000
0.0000
2
ENSG00000264281
ribosomal protein L41 (RPL41) pseudogene
2.8074
0.0002
3
ENSG00000201959
Y RNA
2.5850
0.0000
4
ENSG00000233448
PMS2P9
PMS1 homolog 2, mismatch repair system component pseudogene 9
2.5850
0.0000
5
ENSG00000249766
keratin 8, type II (KRT8) pseudogene
2.5850
0.0009
6
ENSG00000067533
RRP15
ribosomal RNA processing 15 homolog
2.3219
0.0000
7
ENSG00000163106
HPGDS
hematopoietic prostaglandin D synthase
2.3219
0.0000
8
ENSG00000198829
SUCNR1
succinate receptor 1
2.3219
0.0000
9
ENSG00000206889
RNU6-1200P
RNA, U6 small nuclear 1200, pseudogene
2.3219
0.0000
10
ENSG00000215540
RBMY2CP
RNA binding motif protein Y-linked family 2 member C, pseudogene
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000221949
LINC01465
long intergenic non-protein coding RNA 1465
-1.6858
0.0000
63127
ENSG00000199179
MIRLET7I
microRNA let-7i
-1.6858
0.0000
63126
ENSG00000177383
MAGEF1
MAGE family member F1
-1.6853
0.0000
63125
ENSG00000108684
ASIC2
acid sensing ion channel subunit 2
-1.6851
0.0000
63124
ENSG00000268509
novel transcript, antisense to EDEM1
-1.6848
0.0000
63123
ENSG00000236301
MRGPRG-AS1
MRGPRG antisense RNA 1
-1.6846
0.0000
63122
ENSG00000236896
novel transcript
-1.6846
0.0000
63121
ENSG00000180398
MCFD2
multiple coagulation factor deficiency 2, ER cargo receptor complex subunit
-1.6845
0.0000
63120
ENSG00000176894
PXMP2
peroxisomal membrane protein 2
-1.6842
0.0000
63119
ENSG00000149948
HMGA2
high mobility group AT-hook 2
-1.6829
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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