Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773562

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773562


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M189Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204172 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 3.0000 0.0000
2 ENSG00000264281 ribosomal protein L41 (RPL41) pseudogene 2.8074 0.0002
3 ENSG00000201959 Y RNA 2.5850 0.0000
4 ENSG00000233448 PMS2P9 PMS1 homolog 2, mismatch repair system component pseudogene 9 2.5850 0.0000
5 ENSG00000249766 keratin 8, type II (KRT8) pseudogene 2.5850 0.0009
6 ENSG00000067533 RRP15 ribosomal RNA processing 15 homolog 2.3219 0.0000
7 ENSG00000163106 HPGDS hematopoietic prostaglandin D synthase 2.3219 0.0000
8 ENSG00000198829 SUCNR1 succinate receptor 1 2.3219 0.0000
9 ENSG00000206889 RNU6-1200P RNA, U6 small nuclear 1200, pseudogene 2.3219 0.0000
10 ENSG00000215540 RBMY2CP RNA binding motif protein Y-linked family 2 member C, pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000221949 LINC01465 long intergenic non-protein coding RNA 1465 -1.6858 0.0000
63127 ENSG00000199179 MIRLET7I microRNA let-7i -1.6858 0.0000
63126 ENSG00000177383 MAGEF1 MAGE family member F1 -1.6853 0.0000
63125 ENSG00000108684 ASIC2 acid sensing ion channel subunit 2 -1.6851 0.0000
63124 ENSG00000268509 novel transcript, antisense to EDEM1 -1.6848 0.0000
63123 ENSG00000236301 MRGPRG-AS1 MRGPRG antisense RNA 1 -1.6846 0.0000
63122 ENSG00000236896 novel transcript -1.6846 0.0000
63121 ENSG00000180398 MCFD2 multiple coagulation factor deficiency 2, ER cargo receptor complex subunit -1.6845 0.0000
63120 ENSG00000176894 PXMP2 peroxisomal membrane protein 2 -1.6842 0.0000
63119 ENSG00000149948 HMGA2 high mobility group AT-hook 2 -1.6829 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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