SHOGoiN Cell Methylome: GSM2773563

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773563


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M190Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227439 TTTY17B testis-specific transcript, Y-linked 17B 3.4594 0.0000
2 ENSG00000243171 ribosomal protein L17 (RPL17) pseudogene 3.4594 0.0000
4 ENSG00000160285 LSS lanosterol synthase 3.1699 0.0000
5 ENSG00000163491 NEK10 NIMA related kinase 10 3.1699 0.0000
6 ENSG00000215424 MCM3AP-AS1 MCM3AP antisense RNA 1 3.1699 0.0000
7 ENSG00000212282 RNU6-578P RNA, U6 small nuclear 578, pseudogene 3.1081 0.0000
8 ENSG00000214081 CYP4F30P cytochrome P450 family 4 subfamily F member 30, pseudogene 3.0000 0.0000
9 ENSG00000254609 phospholipase A2, group X (PLA2G10) pseudogene 3.0000 0.0000
10 ENSG00000272164 high mobility group nucleosomal binding domain 2 (HMGN2) pseudogene 3.0000 0.0001
63332 ENSG00000229419 RALGAPA1P1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 -2.3948 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000258952 SALRNA1 senescence associated long non-coding RNA 1 -2.3987 0.0000
63340 ENSG00000133103 COG6 component of oligomeric golgi complex 6 -2.3984 0.0000
63339 ENSG00000130700 GATA5 GATA binding protein 5 -2.3979 0.0000
63338 ENSG00000275897 novel transcript -2.3978 0.0000
63337 ENSG00000278581 MIR6080 microRNA 6080 -2.3970 0.0000
63336 ENSG00000249541 3-hydroxyisobutyryl-Coenzyme A hydrolase (HIBCH) pseudogene -2.3966 0.0000
63335 ENSG00000259456 ADNP-AS1 ADNP antisense RNA 1 -2.3960 0.0000
63334 ENSG00000229327 novel transcript -2.3955 0.0000
63333 ENSG00000274227 novel transcript, antisense to ERP29 -2.3950 0.0000
63332 ENSG00000229419 RALGAPA1P1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 -2.3948 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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