Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773563

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773563 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M190	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000227439	TTTY17B	testis-specific transcript, Y-linked 17B	3.4594	0.0000
2	ENSG00000243171		ribosomal protein L17 (RPL17) pseudogene	3.4594	0.0000
4	ENSG00000160285	LSS	lanosterol synthase	3.1699	0.0000
5	ENSG00000163491	NEK10	NIMA related kinase 10	3.1699	0.0000
6	ENSG00000215424	MCM3AP-AS1	MCM3AP antisense RNA 1	3.1699	0.0000
7	ENSG00000212282	RNU6-578P	RNA, U6 small nuclear 578, pseudogene	3.1081	0.0000
8	ENSG00000214081	CYP4F30P	cytochrome P450 family 4 subfamily F member 30, pseudogene	3.0000	0.0000
9	ENSG00000254609		phospholipase A2, group X (PLA2G10) pseudogene	3.0000	0.0000
10	ENSG00000272164		high mobility group nucleosomal binding domain 2 (HMGN2) pseudogene	3.0000	0.0001
63119	ENSG00000099940	SNAP29	synaptosome associated protein 29	-2.3206	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000169621	APLF	aprataxin and PNKP like factor	-2.3219	0.0456
63127	ENSG00000135932	CAB39	calcium binding protein 39	-2.3219	0.5781
63126	ENSG00000116106	EPHA4	EPH receptor A4	-2.3219	0.5781
63125	ENSG00000110660	SLC35F2	solute carrier family 35 member F2	-2.3219	0.5781
63124	ENSG00000253920	IGLV3-31	immunoglobulin lambda variable 3-31 (pseudogene)	-2.3213	0.0000
63123	ENSG00000279127		TEC	-2.3212	0.0000
63122	ENSG00000215369	RPL37P3	ribosomal protein L37 pseudogene 3	-2.3208	0.0010
63121	ENSG00000141434	MEP1B	meprin A subunit beta	-2.3208	0.0009
63120	ENSG00000172785	CBWD1	COBW domain containing 1	-2.3207	0.0000
63119	ENSG00000099940	SNAP29	synaptosome associated protein 29	-2.3206	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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