Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773563
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773563
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M190
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000227439
TTTY17B
testis-specific transcript, Y-linked 17B
3.4594
0.0000
2
ENSG00000243171
ribosomal protein L17 (RPL17) pseudogene
3.4594
0.0000
4
ENSG00000160285
LSS
lanosterol synthase
3.1699
0.0000
5
ENSG00000163491
NEK10
NIMA related kinase 10
3.1699
0.0000
6
ENSG00000215424
MCM3AP-AS1
MCM3AP antisense RNA 1
3.1699
0.0000
7
ENSG00000212282
RNU6-578P
RNA, U6 small nuclear 578, pseudogene
3.1081
0.0000
8
ENSG00000214081
CYP4F30P
cytochrome P450 family 4 subfamily F member 30, pseudogene
3.0000
0.0000
9
ENSG00000254609
phospholipase A2, group X (PLA2G10) pseudogene
3.0000
0.0000
10
ENSG00000272164
high mobility group nucleosomal binding domain 2 (HMGN2) pseudogene
3.0000
0.0001
63119
ENSG00000099940
SNAP29
synaptosome associated protein 29
-2.3206
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000169621
APLF
aprataxin and PNKP like factor
-2.3219
0.0456
63127
ENSG00000135932
CAB39
calcium binding protein 39
-2.3219
0.5781
63126
ENSG00000116106
EPHA4
EPH receptor A4
-2.3219
0.5781
63125
ENSG00000110660
SLC35F2
solute carrier family 35 member F2
-2.3219
0.5781
63124
ENSG00000253920
IGLV3-31
immunoglobulin lambda variable 3-31 (pseudogene)
-2.3213
0.0000
63123
ENSG00000279127
TEC
-2.3212
0.0000
63122
ENSG00000215369
RPL37P3
ribosomal protein L37 pseudogene 3
-2.3208
0.0010
63121
ENSG00000141434
MEP1B
meprin A subunit beta
-2.3208
0.0009
63120
ENSG00000172785
CBWD1
COBW domain containing 1
-2.3207
0.0000
63119
ENSG00000099940
SNAP29
synaptosome associated protein 29
-2.3206
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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