SHOGoiN Cell Methylome: GSM2773563
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773563 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M190 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000227439 | TTTY17B | testis-specific transcript, Y-linked 17B | 3.4594 | 0.0000 |
| 2 | ENSG00000243171 | ribosomal protein L17 (RPL17) pseudogene | 3.4594 | 0.0000 | |
| 4 | ENSG00000160285 | LSS | lanosterol synthase | 3.1699 | 0.0000 |
| 5 | ENSG00000163491 | NEK10 | NIMA related kinase 10 | 3.1699 | 0.0000 |
| 6 | ENSG00000215424 | MCM3AP-AS1 | MCM3AP antisense RNA 1 | 3.1699 | 0.0000 |
| 7 | ENSG00000212282 | RNU6-578P | RNA, U6 small nuclear 578, pseudogene | 3.1081 | 0.0000 |
| 8 | ENSG00000214081 | CYP4F30P | cytochrome P450 family 4 subfamily F member 30, pseudogene | 3.0000 | 0.0000 |
| 9 | ENSG00000254609 | phospholipase A2, group X (PLA2G10) pseudogene | 3.0000 | 0.0000 | |
| 10 | ENSG00000272164 | high mobility group nucleosomal binding domain 2 (HMGN2) pseudogene | 3.0000 | 0.0001 | |
| 63332 | ENSG00000229419 | RALGAPA1P1 | Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 | -2.3948 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000258952 | SALRNA1 | senescence associated long non-coding RNA 1 | -2.3987 | 0.0000 |
| 63340 | ENSG00000133103 | COG6 | component of oligomeric golgi complex 6 | -2.3984 | 0.0000 |
| 63339 | ENSG00000130700 | GATA5 | GATA binding protein 5 | -2.3979 | 0.0000 |
| 63338 | ENSG00000275897 | novel transcript | -2.3978 | 0.0000 | |
| 63337 | ENSG00000278581 | MIR6080 | microRNA 6080 | -2.3970 | 0.0000 |
| 63336 | ENSG00000249541 | 3-hydroxyisobutyryl-Coenzyme A hydrolase (HIBCH) pseudogene | -2.3966 | 0.0000 | |
| 63335 | ENSG00000259456 | ADNP-AS1 | ADNP antisense RNA 1 | -2.3960 | 0.0000 |
| 63334 | ENSG00000229327 | novel transcript | -2.3955 | 0.0000 | |
| 63333 | ENSG00000274227 | novel transcript, antisense to ERP29 | -2.3950 | 0.0000 | |
| 63332 | ENSG00000229419 | RALGAPA1P1 | Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 | -2.3948 | 0.0000 |
