SHOGoiN Cell Methylome: GSM2773564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773564


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M191Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229623 METTL21AP1 methyltransferase like 21A pseudogene 1 3.4933 0.0000
2 ENSG00000237709 EEF1A1P28 eukaryotic translation elongation factor 1 alpha 1 pseudogene 28 3.4594 0.0000
3 ENSG00000251783 RNU6-1170P RNA, U6 small nuclear 1170, pseudogene 3.2770 0.0000
4 ENSG00000206899 RNU6-36P RNA, U6 small nuclear 36, pseudogene 3.1699 0.0000
5 ENSG00000258452 high mobility group nucleosomal binding domain 2 (HMGN2) pseudogene 3.0865 0.0000
6 ENSG00000270782 C18orf32 chromosome 18 open reading frame 32 (C18orf32) pseudogene 3.0763 0.0000
7 ENSG00000269570 novel transcript, antisense to ZFP91 3.0624 0.0000
8 ENSG00000189023 MAGEB16 MAGE family member B16 3.0266 0.0000
9 ENSG00000227563 RNF11P2 ring finger protein 11 pseudogene 2 3.0000 0.0000
10 ENSG00000230233 novel transcript 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000267365 KCNJ2-AS1 KCNJ2 antisense RNA 1 -2.2911 0.0000
63340 ENSG00000168283 BMI1 BMI1 proto-oncogene, polycomb ring finger -2.2888 0.0000
63339 ENSG00000226864 ATE1-AS1 ATE1 antisense RNA 1 -2.2887 0.0000
63338 ENSG00000153132 CLGN calmegin -2.2875 0.0000
63337 ENSG00000229893 novel transcript, antisense to TAX1BP1 -2.2868 0.0000
63336 ENSG00000160097 FNDC5 fibronectin type III domain containing 5 -2.2858 0.0000
63335 ENSG00000258976 novel transcript -2.2858 0.0000
63334 ENSG00000139163 ETNK1 ethanolamine kinase 1 -2.2852 0.0000
63333 ENSG00000276698 novel transcript -2.2851 0.0000
63332 ENSG00000225793 novel transcript -2.2850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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