Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773565

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773565


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M192Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248851 fibroblast growth factor binding protein 1 (FGFBP1) pseudogene 4.0061 0.0000
2 ENSG00000258629 NCOA4P1 nuclear receptor coactivator 4 pseudogene 1 3.7610 0.0000
3 ENSG00000202200 Y RNA 3.2297 0.0000
4 ENSG00000178053 MLF1 myeloid leukemia factor 1 3.1699 0.0000
5 ENSG00000196805 SPRR2B small proline rich protein 2B 3.1699 0.0000
6 ENSG00000170801 HTRA3 HtrA serine peptidase 3 3.0939 0.0000
7 ENSG00000042286 AIFM2 apoptosis inducing factor mitochondria associated 2 3.0000 0.0000
8 ENSG00000235143 novel transcript 3.0000 0.0000
9 ENSG00000252530 RNU6-965P RNA, U6 small nuclear 965, pseudogene 3.0000 0.0000
10 ENSG00000233685 OR6L1P olfactory receptor family 6 subfamily L member 1 pseudogene 2.9431 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000274585 RNU2-1 RNA, U2 small nuclear 1 -2.2973 0.0000
63127 ENSG00000268038 LINC01785 long intergenic non-protein coding RNA 1785 -2.2972 0.0000
63126 ENSG00000170175 CHRNB1 cholinergic receptor nicotinic beta 1 subunit -2.2968 0.0000
63125 ENSG00000167550 RHEBL1 RHEB like 1 -2.2966 0.0000
63124 ENSG00000066654 THUMPD1 THUMP domain containing 1 -2.2962 0.0000
63123 ENSG00000228201 novel transcript -2.2961 0.0000
63122 ENSG00000178538 CA8 carbonic anhydrase 8 -2.2959 0.0000
63121 ENSG00000236708 SDK1-AS1 SDK1 antisense RNA 1 -2.2959 0.0000
63120 ENSG00000183779 ZNF703 zinc finger protein 703 -2.2946 0.0000
63119 ENSG00000172164 SNTB1 syntrophin beta 1 -2.2940 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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