SHOGoiN Cell Methylome: GSM2773565

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773565


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M192Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248851 fibroblast growth factor binding protein 1 (FGFBP1) pseudogene 4.0061 0.0000
2 ENSG00000258629 nuclear receptor coactivator 4 (NCOA4) pseudogene 3.7610 0.0000
3 ENSG00000202200 NA 3.2297 0.0000
4 ENSG00000178053 MLF1 myeloid leukemia factor 1 3.1699 0.0000
5 ENSG00000196805 SPRR2B small proline rich protein 2B 3.1699 0.0000
6 ENSG00000170801 HTRA3 HtrA serine peptidase 3 3.0939 0.0000
7 ENSG00000042286 AIFM2 apoptosis inducing factor mitochondria associated 2 3.0000 0.0000
8 ENSG00000235143 novel transcript 3.0000 0.0000
9 ENSG00000252530 RNU6-965P RNA, U6 small nuclear 965, pseudogene 3.0000 0.0000
10 ENSG00000233685 OR6L1P olfactory receptor family 6 subfamily L member 1 pseudogene 2.9431 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000103064 SLC7A6 solute carrier family 7 member 6 -2.3801 0.0000
63340 ENSG00000253695 novel transcript -2.3799 0.0000
63339 ENSG00000130726 TRIM28 tripartite motif containing 28 -2.3798 0.0000
63338 ENSG00000200102 RNU6-252P RNA, U6 small nuclear 252, pseudogene -2.3797 0.0000
63337 ENSG00000243541 RN7SL104P RNA, 7SL, cytoplasmic 104, pseudogene -2.3780 0.0000
63336 ENSG00000271899 MIR4466 microRNA 4466 -2.3775 0.0000
63335 ENSG00000218537 MIF-AS1 MIF antisense RNA 1 -2.3768 0.0000
63334 ENSG00000224842 novel transcript, antisense to LIM1B -2.3752 0.0000
63333 ENSG00000236651 DLX2-DT DLX2 divergent transcript -2.3748 0.0000
63332 ENSG00000277572 NA -2.3748 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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