SHOGoiN Cell Methylome: GSM2773566

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773566


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M193Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224657 RBMY2BP RNA binding motif protein, Y-linked, family 2, member B pseudogene 1.5850 0.0181
2 ENSG00000237823 CDY19P chromodomain Y-linked 19 pseudogene 1.5850 0.0003
3 ENSG00000252468 RNU2-57P RNA, U2 small nuclear 57, pseudogene 1.5850 0.0003
4 ENSG00000273589 testis specific protein, Y-linked 1 (TSPY1) pseudogene 1.5850 0.0181
5 ENSG00000228933 novel transcript 1.4111 0.0000
6 ENSG00000212282 RNU6-578P RNA, U6 small nuclear 578, pseudogene 1.2925 0.0000
7 ENSG00000216740 ANXA2P3 annexin A2 pseudogene 3 1.2925 0.0024
8 ENSG00000219627 CYCSP17 CYCS pseudogene 17 1.1785 0.0000
9 ENSG00000249052 novel transcript 1.1462 0.0000
10 ENSG00000281566 novel transcript 1.1462 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000264012 novel transcript, antisense to GATA6 -1.8125 0.0000
63340 ENSG00000222552 RNA5SP60 RNA, 5S ribosomal pseudogene 60 -1.8123 0.0000
63339 ENSG00000261044 novel transcript, antisense to ARC -1.8123 0.0000
63338 ENSG00000198569 SLC34A3 solute carrier family 34 member 3 -1.8112 0.0000
63337 ENSG00000135333 EPHA7 EPH receptor A7 -1.8110 0.0000
63336 ENSG00000242540 novel transcript -1.8109 0.0000
63335 ENSG00000261058 novel transcript -1.8106 0.0000
63334 ENSG00000185176 AQP12B aquaporin 12B -1.8104 0.0000
63333 ENSG00000234361 novel transcript -1.8100 0.0000
63332 ENSG00000184221 OLIG1 oligodendrocyte transcription factor 1 -1.8099 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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