Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773566

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773566


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M193Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224657 RBMY2BP RNA binding motif protein Y-linked family 2 member B, pseudogene 1.5850 0.0181
2 ENSG00000237823 CDY19P chromodomain Y-linked 19 pseudogene 1.5850 0.0003
3 ENSG00000252468 RNU2-57P RNA, U2 small nuclear 57, pseudogene 1.5850 0.0003
4 ENSG00000273589 testis specific protein, Y-linked 1 (TSPY1) pseudogene 1.5850 0.0181
5 ENSG00000228933 novel transcript 1.4111 0.0000
6 ENSG00000212282 RNU6-578P RNA, U6 small nuclear 578, pseudogene 1.2925 0.0000
7 ENSG00000216740 ANXA2P3 annexin A2 pseudogene 3 1.2925 0.0024
8 ENSG00000219627 CYCSP17 CYCS pseudogene 17 1.1785 0.0000
9 ENSG00000249052 novel transcript 1.1462 0.0000
10 ENSG00000281566 novel transcript 1.1462 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000279799 TEC -1.7628 0.0000
63127 ENSG00000172247 C1QTNF4 C1q and TNF related 4 -1.7625 0.0000
63126 ENSG00000176435 CLEC14A C-type lectin domain containing 14A -1.7624 0.0000
63125 ENSG00000170469 SPATA24 spermatogenesis associated 24 -1.7621 0.0000
63124 ENSG00000240445 FOXO3B forkhead box O3B -1.7619 0.0000
63123 ENSG00000233108 GLCCI1-DT GLCCI1 divergent transcript -1.7619 0.0000
63122 ENSG00000163453 IGFBP7 insulin like growth factor binding protein 7 -1.7616 0.0000
63121 ENSG00000132286 TIMM10B translocase of inner mitochondrial membrane 10B -1.7615 0.0000
63120 ENSG00000168264 IRF2BP2 interferon regulatory factor 2 binding protein 2 -1.7614 0.0000
63119 ENSG00000274356 ral guanine nucleotide dissociation stimulator (RALGDS) pseudogene -1.7610 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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