SHOGoiN Cell Methylome: GSM2773567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773567


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M194Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212216 RNU6-816P RNA, U6 small nuclear 816, pseudogene 2.5850 0.0000
2 ENSG00000229221 HNRNPA1P66 heterogeneous nuclear ribonucleoprotein A1 pseudogene 66 2.5850 0.0000
3 ENSG00000236666 POTEH-AS1 POTEH antisense RNA 1 2.5850 0.0000
4 ENSG00000131174 COX7B cytochrome c oxidase subunit 7B 2.4973 0.0000
5 ENSG00000207270 RNU6-601P RNA, U6 small nuclear 601, pseudogene 2.3219 0.0003
6 ENSG00000223874 LINC01921 long intergenic non-protein coding RNA 1921 2.3219 0.0003
7 ENSG00000224219 EndoMitotic Oocytes (EMO-1) pseudogene 2.3219 0.0003
8 ENSG00000227408 AMYP1 amylase alpha pseudogene 1 2.3219 0.0003
9 ENSG00000259418 novel transcript, antisense to SORD 2.3219 0.0003
10 ENSG00000265908 novel transcript, antisense to PHF12 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253622 novel transcript -2.0000 0.3903
63340 ENSG00000253489 novel transcript -2.0000 0.6200
63339 ENSG00000253393 RANP9 RAN pseudogene 9 -2.0000 1.0000
63338 ENSG00000253374 novel transcript -2.0000 1.0000
63337 ENSG00000253170 novel transcript -2.0000 1.0000
63336 ENSG00000253020 RN7SKP40 RN7SK pseudogene 40 -2.0000 1.0000
63335 ENSG00000252867 RNU6-909P RNA, U6 small nuclear 909, pseudogene -2.0000 1.0000
63334 ENSG00000252766 RNU6-255P RNA, U6 small nuclear 255, pseudogene -2.0000 0.3903
63333 ENSG00000252723 RNU6-677P RNA, U6 small nuclear 677, pseudogene -2.0000 1.0000
63332 ENSG00000251498 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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