Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773568


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M195Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202195 Y RNA 2.8074 0.0000
2 ENSG00000213492 NT5C3AP1 NT5C3A pseudogene 1 2.5850 0.0001
3 ENSG00000214281 HMGN2P39 high mobility group nucleosomal binding domain 2 pseudogene 39 2.5850 0.0001
4 ENSG00000223824 TERF1P6 TERF1 pseudogene 6 2.5850 0.0000
5 ENSG00000273643 PPP1R26P2 protein phosphatase 1 regulatory subunit 26 pseudogene 2 2.5850 0.0001
6 ENSG00000264559 MIR3162 microRNA 3162 2.5005 0.0000
7 ENSG00000201465 NA 2.4047 0.0000
8 ENSG00000220868 MRPL35P1 mitochondrial ribosomal protein L35 pseudogene 1 2.3219 0.0000
9 ENSG00000224924 LINC00320 long intergenic non-protein coding RNA 320 2.3219 0.0004
10 ENSG00000236069 novel transcript 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000228815 MARK2P13 microtubule affinity regulating kinase 2 pseudogene 13 -1.8511 0.0004
63127 ENSG00000151883 PARP8 poly(ADP-ribose) polymerase family member 8 -1.8511 0.0000
63126 ENSG00000178977 LINC00324 long intergenic non-protein coding RNA 324 -1.8508 0.0000
63125 ENSG00000261693 novel transcript, antisense to TSNARE1 -1.8507 0.0000
63124 ENSG00000154736 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 -1.8505 0.0000
63123 ENSG00000223573 TINCR TINCR ubiquitin domain containing -1.8502 0.0000
63122 ENSG00000203778 FAM229B family with sequence similarity 229 member B -1.8500 0.0000
63121 ENSG00000132635 PCED1A PC-esterase domain containing 1A -1.8499 0.0000
63120 ENSG00000260823 novel transcript -1.8493 0.0000
63119 ENSG00000244300 GATA2-AS1 GATA2 antisense RNA 1 -1.8490 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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