Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773568
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773568
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M195
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000202195
Y RNA
2.8074
0.0000
2
ENSG00000213492
NT5C3AP1
NT5C3A pseudogene 1
2.5850
0.0001
3
ENSG00000214281
HMGN2P39
high mobility group nucleosomal binding domain 2 pseudogene 39
2.5850
0.0001
4
ENSG00000223824
TERF1P6
TERF1 pseudogene 6
2.5850
0.0000
5
ENSG00000273643
PPP1R26P2
protein phosphatase 1 regulatory subunit 26 pseudogene 2
2.5850
0.0001
6
ENSG00000264559
MIR3162
microRNA 3162
2.5005
0.0000
7
ENSG00000201465
NA
2.4047
0.0000
8
ENSG00000220868
MRPL35P1
mitochondrial ribosomal protein L35 pseudogene 1
2.3219
0.0000
9
ENSG00000224924
LINC00320
long intergenic non-protein coding RNA 320
2.3219
0.0004
10
ENSG00000236069
novel transcript
2.3219
0.0004
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000228815
MARK2P13
microtubule affinity regulating kinase 2 pseudogene 13
-1.8511
0.0004
63127
ENSG00000151883
PARP8
poly(ADP-ribose) polymerase family member 8
-1.8511
0.0000
63126
ENSG00000178977
LINC00324
long intergenic non-protein coding RNA 324
-1.8508
0.0000
63125
ENSG00000261693
novel transcript, antisense to TSNARE1
-1.8507
0.0000
63124
ENSG00000154736
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5
-1.8505
0.0000
63123
ENSG00000223573
TINCR
TINCR ubiquitin domain containing
-1.8502
0.0000
63122
ENSG00000203778
FAM229B
family with sequence similarity 229 member B
-1.8500
0.0000
63121
ENSG00000132635
PCED1A
PC-esterase domain containing 1A
-1.8499
0.0000
63120
ENSG00000260823
novel transcript
-1.8493
0.0000
63119
ENSG00000244300
GATA2-AS1
GATA2 antisense RNA 1
-1.8490
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...