Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773568

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773568 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M195	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000202195		Y RNA	2.8074	0.0000
2	ENSG00000213492	NT5C3AP1	NT5C3A pseudogene 1	2.5850	0.0001
3	ENSG00000214281	HMGN2P39	high mobility group nucleosomal binding domain 2 pseudogene 39	2.5850	0.0001
4	ENSG00000223824	TERF1P6	TERF1 pseudogene 6	2.5850	0.0000
5	ENSG00000273643	PPP1R26P2	protein phosphatase 1 regulatory subunit 26 pseudogene 2	2.5850	0.0001
6	ENSG00000264559	MIR3162	microRNA 3162	2.5005	0.0000
7	ENSG00000201465		NA	2.4047	0.0000
8	ENSG00000220868	MRPL35P1	mitochondrial ribosomal protein L35 pseudogene 1	2.3219	0.0000
9	ENSG00000224924	LINC00320	long intergenic non-protein coding RNA 320	2.3219	0.0004
10	ENSG00000236069		novel transcript	2.3219	0.0004

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000228815	MARK2P13	microtubule affinity regulating kinase 2 pseudogene 13	-1.8511	0.0004
63127	ENSG00000151883	PARP8	poly(ADP-ribose) polymerase family member 8	-1.8511	0.0000
63126	ENSG00000178977	LINC00324	long intergenic non-protein coding RNA 324	-1.8508	0.0000
63125	ENSG00000261693		novel transcript, antisense to TSNARE1	-1.8507	0.0000
63124	ENSG00000154736	ADAMTS5	ADAM metallopeptidase with thrombospondin type 1 motif 5	-1.8505	0.0000
63123	ENSG00000223573	TINCR	TINCR ubiquitin domain containing	-1.8502	0.0000
63122	ENSG00000203778	FAM229B	family with sequence similarity 229 member B	-1.8500	0.0000
63121	ENSG00000132635	PCED1A	PC-esterase domain containing 1A	-1.8499	0.0000
63120	ENSG00000260823		novel transcript	-1.8493	0.0000
63119	ENSG00000244300	GATA2-AS1	GATA2 antisense RNA 1	-1.8490	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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