SHOGoiN Cell Methylome: GSM2773568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773568


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M195Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202195 NA 2.8074 0.0000
2 ENSG00000213492 NT5C3AP1 5'-nucleotidase, cytosolic IIIA pseudogene 1 2.5850 0.0001
3 ENSG00000214281 HMGN2P39 high mobility group nucleosomal binding domain 2 pseudogene 39 2.5850 0.0001
4 ENSG00000223824 pseudogene similar to part of telomeric repeat binding factor (NIMA-interacting) 1 TERF1 2.5850 0.0000
5 ENSG00000273643 PPP1R26P2 protein phosphatase 1 regulatory subunit 26 pseudogene 2 2.5850 0.0001
6 ENSG00000264559 MIR3162 microRNA 3162 2.5005 0.0000
7 ENSG00000201465 NA 2.4047 0.0000
8 ENSG00000220868 MRPL35P1 mitochondrial ribosomal protein L35 pseudogene 1 2.3219 0.0000
9 ENSG00000224924 LINC00320 long intergenic non-protein coding RNA 320 2.3219 0.0004
10 ENSG00000236069 novel transcript 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000207606 MIR554 microRNA 554 -1.9268 0.0000
63340 ENSG00000241146 RPL7P41 ribosomal protein L7 pseudogene 41 -1.9263 0.0000
63339 ENSG00000237626 novel transcript -1.9262 0.0000
63338 ENSG00000263465 SRSF8 serine and arginine rich splicing factor 8 -1.9261 0.0000
63337 ENSG00000196388 INCA1 inhibitor of CDK, cyclin A1 interacting protein 1 -1.9257 0.0000
63336 ENSG00000276391 galactosidase, beta 1-like (GLB1L) pseudogene -1.9251 0.1610
63335 ENSG00000228594 FNDC10 fibronectin type III domain containing 10 -1.9243 0.0000
63334 ENSG00000270281 zinc finger protein 134 pseudogene -1.9229 0.0000
63333 ENSG00000102870 ZNF629 zinc finger protein 629 -1.9208 0.0000
63332 ENSG00000231856 novel transcript -1.9201 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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