SHOGoiN Cell Methylome: GSM2773568
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773568 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M195 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000202195 | NA | 2.8074 | 0.0000 | |
| 2 | ENSG00000213492 | NT5C3AP1 | 5'-nucleotidase, cytosolic IIIA pseudogene 1 | 2.5850 | 0.0001 |
| 3 | ENSG00000214281 | HMGN2P39 | high mobility group nucleosomal binding domain 2 pseudogene 39 | 2.5850 | 0.0001 |
| 4 | ENSG00000223824 | pseudogene similar to part of telomeric repeat binding factor (NIMA-interacting) 1 TERF1 | 2.5850 | 0.0000 | |
| 5 | ENSG00000273643 | PPP1R26P2 | protein phosphatase 1 regulatory subunit 26 pseudogene 2 | 2.5850 | 0.0001 |
| 6 | ENSG00000264559 | MIR3162 | microRNA 3162 | 2.5005 | 0.0000 |
| 7 | ENSG00000201465 | NA | 2.4047 | 0.0000 | |
| 8 | ENSG00000220868 | MRPL35P1 | mitochondrial ribosomal protein L35 pseudogene 1 | 2.3219 | 0.0000 |
| 9 | ENSG00000224924 | LINC00320 | long intergenic non-protein coding RNA 320 | 2.3219 | 0.0004 |
| 10 | ENSG00000236069 | novel transcript | 2.3219 | 0.0004 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000207606 | MIR554 | microRNA 554 | -1.9268 | 0.0000 |
| 63340 | ENSG00000241146 | RPL7P41 | ribosomal protein L7 pseudogene 41 | -1.9263 | 0.0000 |
| 63339 | ENSG00000237626 | novel transcript | -1.9262 | 0.0000 | |
| 63338 | ENSG00000263465 | SRSF8 | serine and arginine rich splicing factor 8 | -1.9261 | 0.0000 |
| 63337 | ENSG00000196388 | INCA1 | inhibitor of CDK, cyclin A1 interacting protein 1 | -1.9257 | 0.0000 |
| 63336 | ENSG00000276391 | galactosidase, beta 1-like (GLB1L) pseudogene | -1.9251 | 0.1610 | |
| 63335 | ENSG00000228594 | FNDC10 | fibronectin type III domain containing 10 | -1.9243 | 0.0000 |
| 63334 | ENSG00000270281 | zinc finger protein 134 pseudogene | -1.9229 | 0.0000 | |
| 63333 | ENSG00000102870 | ZNF629 | zinc finger protein 629 | -1.9208 | 0.0000 |
| 63332 | ENSG00000231856 | novel transcript | -1.9201 | 0.0000 |
