Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773569
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773569
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M196
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000234322
ST13P18
ST13, Hsp70 interacting protein pseudogene 18
2.8074
0.0000
2
ENSG00000235483
GYG2-AS1
GYG2 antisense RNA 1
2.8074
0.0000
3
ENSG00000201607
RNU4-16P
RNA, U4 small nuclear 16, pseudogene
2.3219
0.0002
4
ENSG00000224485
USP9YP7
USP9Y pseudogene 7
2.3219
0.0002
5
ENSG00000229236
TTTY10
testis-specific transcript, Y-linked 10
2.3219
0.0002
6
ENSG00000229384
HMGB1P16
high mobility group box 1 pseudogene 16
2.3219
0.0002
7
ENSG00000276871
5.8S ribosomal RNA
2.3219
0.0000
8
ENSG00000279530
TEC
2.3219
0.0002
9
ENSG00000212100
MIR764
microRNA 764
2.1095
0.0000
10
ENSG00000250949
novel transcript
2.0575
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000274740
NA
-2.1908
0.0000
63127
ENSG00000129071
MBD4
methyl-CpG binding domain 4, DNA glycosylase
-2.1904
0.0000
63126
ENSG00000222020
HDAC4-AS1
HDAC4 antisense RNA 1
-2.1899
0.0000
63125
ENSG00000183828
NUDT14
nudix hydrolase 14
-2.1892
0.0000
63124
ENSG00000280026
novel transcript, antisense to PCDHGB1
-2.1892
0.0000
63123
ENSG00000200164
Y RNA
-2.1891
0.0000
63122
ENSG00000182450
KCNK4
potassium two pore domain channel subfamily K member 4
-2.1890
0.0000
63121
ENSG00000145088
EAF2
ELL associated factor 2
-2.1890
0.0000
63120
ENSG00000137727
ARHGAP20
Rho GTPase activating protein 20
-2.1888
0.0000
63119
ENSG00000231702
ribosomal protein L39 (RPL39) pseudogene
-2.1883
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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