Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773569

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773569 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M196	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000234322	ST13P18	ST13, Hsp70 interacting protein pseudogene 18	2.8074	0.0000
2	ENSG00000235483	GYG2-AS1	GYG2 antisense RNA 1	2.8074	0.0000
3	ENSG00000201607	RNU4-16P	RNA, U4 small nuclear 16, pseudogene	2.3219	0.0002
4	ENSG00000224485	USP9YP7	USP9Y pseudogene 7	2.3219	0.0002
5	ENSG00000229236	TTTY10	testis-specific transcript, Y-linked 10	2.3219	0.0002
6	ENSG00000229384	HMGB1P16	high mobility group box 1 pseudogene 16	2.3219	0.0002
7	ENSG00000276871		5.8S ribosomal RNA	2.3219	0.0000
8	ENSG00000279530		TEC	2.3219	0.0002
9	ENSG00000212100	MIR764	microRNA 764	2.1095	0.0000
10	ENSG00000250949		novel transcript	2.0575	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000274740		NA	-2.1908	0.0000
63127	ENSG00000129071	MBD4	methyl-CpG binding domain 4, DNA glycosylase	-2.1904	0.0000
63126	ENSG00000222020	HDAC4-AS1	HDAC4 antisense RNA 1	-2.1899	0.0000
63125	ENSG00000183828	NUDT14	nudix hydrolase 14	-2.1892	0.0000
63124	ENSG00000280026		novel transcript, antisense to PCDHGB1	-2.1892	0.0000
63123	ENSG00000200164		Y RNA	-2.1891	0.0000
63122	ENSG00000182450	KCNK4	potassium two pore domain channel subfamily K member 4	-2.1890	0.0000
63121	ENSG00000145088	EAF2	ELL associated factor 2	-2.1890	0.0000
63120	ENSG00000137727	ARHGAP20	Rho GTPase activating protein 20	-2.1888	0.0000
63119	ENSG00000231702		ribosomal protein L39 (RPL39) pseudogene	-2.1883	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...