SHOGoiN Cell Methylome: GSM2773569

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773569


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M196Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234322 ST13P18 ST13, Hsp70 interacting protein pseudogene 18 2.8074 0.0000
2 ENSG00000235483 GYG2-AS1 GYG2 antisense RNA 1 2.8074 0.0000
3 ENSG00000201607 RNU4-16P RNA, U4 small nuclear 16, pseudogene 2.3219 0.0002
4 ENSG00000224485 USP9YP7 USP9Y pseudogene 7 2.3219 0.0002
5 ENSG00000229236 TTTY10 testis-specific transcript, Y-linked 10 2.3219 0.0002
6 ENSG00000229384 HMGB1P16 high mobility group box 1 pseudogene 16 2.3219 0.0002
7 ENSG00000276871 NA 2.3219 0.0000
8 ENSG00000279530 TEC 2.3219 0.0002
9 ENSG00000212100 MIR764 microRNA 764 2.1095 0.0000
10 ENSG00000250949 novel transcript 2.0575 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000104140 RHOV ras homolog family member V -2.2590 0.0000
63340 ENSG00000223393 novel transcript -2.2588 0.0000
63339 ENSG00000244274 DBNDD2 dysbindin domain containing 2 -2.2588 0.0000
63338 ENSG00000225510 PCDH8P1 protocadherin 8 pseudogene 1 -2.2587 0.0000
63337 ENSG00000225869 TNF receptor-associated factor (TNF) pseudogene -2.2586 0.0032
63336 ENSG00000258457 novel transcript, antisense to C14orf93 -2.2585 0.0000
63335 ENSG00000241211 IQCJ-SCHIP1-AS1 IQCJ-SCHIP1 readthrough antisense RNA 1 -2.2585 0.0000
63334 ENSG00000267729 novel transcript, antisense to TLCD1 -2.2576 0.0000
63333 ENSG00000244501 RN7SL623P RNA, 7SL, cytoplasmic 623, pseudogene -2.2572 0.0000
63332 ENSG00000122859 NEUROG3 neurogenin 3 -2.2572 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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