Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773569

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773569


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M196Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234322 ST13P18 ST13, Hsp70 interacting protein pseudogene 18 2.8074 0.0000
2 ENSG00000235483 GYG2-AS1 GYG2 antisense RNA 1 2.8074 0.0000
3 ENSG00000201607 RNU4-16P RNA, U4 small nuclear 16, pseudogene 2.3219 0.0002
4 ENSG00000224485 USP9YP7 USP9Y pseudogene 7 2.3219 0.0002
5 ENSG00000229236 TTTY10 testis-specific transcript, Y-linked 10 2.3219 0.0002
6 ENSG00000229384 HMGB1P16 high mobility group box 1 pseudogene 16 2.3219 0.0002
7 ENSG00000276871 5.8S ribosomal RNA 2.3219 0.0000
8 ENSG00000279530 TEC 2.3219 0.0002
9 ENSG00000212100 MIR764 microRNA 764 2.1095 0.0000
10 ENSG00000250949 novel transcript 2.0575 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000274740 NA -2.1908 0.0000
63127 ENSG00000129071 MBD4 methyl-CpG binding domain 4, DNA glycosylase -2.1904 0.0000
63126 ENSG00000222020 HDAC4-AS1 HDAC4 antisense RNA 1 -2.1899 0.0000
63125 ENSG00000183828 NUDT14 nudix hydrolase 14 -2.1892 0.0000
63124 ENSG00000280026 novel transcript, antisense to PCDHGB1 -2.1892 0.0000
63123 ENSG00000200164 Y RNA -2.1891 0.0000
63122 ENSG00000182450 KCNK4 potassium two pore domain channel subfamily K member 4 -2.1890 0.0000
63121 ENSG00000145088 EAF2 ELL associated factor 2 -2.1890 0.0000
63120 ENSG00000137727 ARHGAP20 Rho GTPase activating protein 20 -2.1888 0.0000
63119 ENSG00000231702 ribosomal protein L39 (RPL39) pseudogene -2.1883 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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