SHOGoiN Cell Methylome: GSM2773569
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773569 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M196 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000234322 | ST13P18 | ST13, Hsp70 interacting protein pseudogene 18 | 2.8074 | 0.0000 |
| 2 | ENSG00000235483 | GYG2-AS1 | GYG2 antisense RNA 1 | 2.8074 | 0.0000 |
| 3 | ENSG00000201607 | RNU4-16P | RNA, U4 small nuclear 16, pseudogene | 2.3219 | 0.0002 |
| 4 | ENSG00000224485 | USP9YP7 | USP9Y pseudogene 7 | 2.3219 | 0.0002 |
| 5 | ENSG00000229236 | TTTY10 | testis-specific transcript, Y-linked 10 | 2.3219 | 0.0002 |
| 6 | ENSG00000229384 | HMGB1P16 | high mobility group box 1 pseudogene 16 | 2.3219 | 0.0002 |
| 7 | ENSG00000276871 | NA | 2.3219 | 0.0000 | |
| 8 | ENSG00000279530 | TEC | 2.3219 | 0.0002 | |
| 9 | ENSG00000212100 | MIR764 | microRNA 764 | 2.1095 | 0.0000 |
| 10 | ENSG00000250949 | novel transcript | 2.0575 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000104140 | RHOV | ras homolog family member V | -2.2590 | 0.0000 |
| 63340 | ENSG00000223393 | novel transcript | -2.2588 | 0.0000 | |
| 63339 | ENSG00000244274 | DBNDD2 | dysbindin domain containing 2 | -2.2588 | 0.0000 |
| 63338 | ENSG00000225510 | PCDH8P1 | protocadherin 8 pseudogene 1 | -2.2587 | 0.0000 |
| 63337 | ENSG00000225869 | TNF receptor-associated factor (TNF) pseudogene | -2.2586 | 0.0032 | |
| 63336 | ENSG00000258457 | novel transcript, antisense to C14orf93 | -2.2585 | 0.0000 | |
| 63335 | ENSG00000241211 | IQCJ-SCHIP1-AS1 | IQCJ-SCHIP1 readthrough antisense RNA 1 | -2.2585 | 0.0000 |
| 63334 | ENSG00000267729 | novel transcript, antisense to TLCD1 | -2.2576 | 0.0000 | |
| 63333 | ENSG00000244501 | RN7SL623P | RNA, 7SL, cytoplasmic 623, pseudogene | -2.2572 | 0.0000 |
| 63332 | ENSG00000122859 | NEUROG3 | neurogenin 3 | -2.2572 | 0.0000 |
